Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02003 ATGACATGGTGCAATGACTCAGATGAGGAGAGGGGAATTGAACTGGTTGCACCAACTATTACTACTCCTTCAACTAATAACACTACTGTTCTCACTGATCACACAACAAAACCAACCGAAATTCGCACCATAACTTGTCCCTCATGTGGCCATAACATTCAATTCCAAGATCAGACTGGAATCAATGACTTGCCGGGATTACCAGCTGGAGTGAAGTTTGATCCGAATGACCAAGAGATATTAGAGCATTTGGAAGCAAAGGTACTGTCTGATGTGCCAAAGCTCCATCCCCTTATTGATGAGTTCATACCAACGCTTGAAGGAGAGAACGGGATCTGTTATACGCATCCAGAAAAGCTTCCAGGTGTAAGCAAAGATGGACAAATCCGCCACTTCTTTCACAGGCCATCTAAAGCATACACAACCGGAACAAGAAAGAGAAGAAAGGTTCACACCGACGAAGAAGGAAGCGAGACGAGGTGGCACAAAACAGGCAAAACCAGACCAGTTTTTCTAGGTGGTGCTGTGAAGGGTTTCAAGAAAATCCTGGTCCTCTATACCAACTATGGAAGACAAAAGAAGCCCGAGAAGACCAATTGGGTGATGCACCAATACCACCTTGGCACCAACGAGGAAGAGAAAGATGGAGAATTGGTGGTCTCAAAGGTCTTCTACCAAACACAACCTAGGCAATGTGGTAATTCCAATATTATAAAACAAGATCTCTATGATGAAGAAAGATTGATCACTAACCAACAAAGTGTCCATAATGATGACATTAATATAATACCTAAAAACAATGCAACTACTCTTATGGACTACTACAACCCTACCCCTTTCATAAATTATGACCAATTGGGTGGTCGTAGTATTAATAGGGAAAGTTCACCTCAACTTATTCCAAATTTGGTCATGCAAGGTGATAGCTCTTCTTTCATTCGATTAGCAATGGATGCAACCAAGACCAGGCTGGACAGAAAATAG 984 0.4217 MTWCNDSDEERGIELVAPTITTPSTNNTTVLTDHTTKPTEIRTITCPSCGHNIQFQDQTGINDLPGLPAGVKFDPNDQEILEHLEAKVLSDVPKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEEGSETRWHKTGKTRPVFLGGAVKGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGTNEEEKDGELVVSKVFYQTQPRQCGNSNIIKQDLYDEERLITNQQSVHNDDINIIPKNNATTLMDYYNPTPFINYDQLGGRSINRESSPQLIPNLVMQGDSSSFIRLAMDATKTRLDRK 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02003 327 ProSiteProfiles NAC domain profile. 67 226 IPR003441 GO:0003677|GO:0006355
Pumo6g02003 327 Pfam No apical meristem (NAM) protein 68 207 IPR003441 GO:0003677|GO:0006355
Pumo6g02003 327 MobiDBLite consensus disorder prediction 146 162 - -
Pumo6g02003 327 SUPERFAMILY NAC domain 62 226 IPR036093 GO:0003677|GO:0006355
Pumo6g02003 327 Gene3D NAC domain 76 230 IPR036093 GO:0003677|GO:0006355
Pumo6g02003 327 MobiDBLite consensus disorder prediction 140 162 - -
Pumo6g02003 327 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 27 258 IPR044799 GO:0003700
Pumo6g02003 327 FunFam NAC domain-containing protein 73 76 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02003 Pumo-Chr6 33213716 33218274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02003 1 235 NAC Transcription Factor Family AT4G28500 72.458 7.15e-125 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo6g02003 NAM 2.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02003 - - gmx:100783888 590.497