Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02001 ATGTATAGGTCTAGCTTTTTAGGGAATCCTGGGTTGTGTGGGGATTTGAAGGGTTTGTGTGATGGTAGAAGTGAGGAGAAGAGTGTGGGTTATGTTTGGCTGCTTCGGACGATTTTCGTTGTTGCCACTTTGGTTTTCCTTGTTGGTGTGGTTTGGTTTTACTTTAGGTATAAGAATTTCCACGATGCGAAGAGGGCGATCGATAAGTCGAAGTGGACGTTGATGTCGTTTCATAAACTGGGTTTTAGTGAAGATGAGATTTTGAACTGTCTTGATGAGGATAATGTGATTGGGAGTGGATCGTCCGGGAAGGTCTACAAGGTTGTGCTGAGCAGTGGGGAGGTTGTGGCTGTGAAGAAGATATGGGGAGGGGTTAGGAAGGAGGTGGAGAGTGGGGATGTTGAGAAGGGTAGGGTTCAGGACAATGCTTTTGATGCAGAGGTTGAAACTTTGGGTAAAATCAGGCACAAGAACATTGTCAAGCTGTGGTGTTGCTGCACCACTAGGGATTGCAAGCTCTTGGTTTATGAATATATGCCTAATGGAAGTCTTGGTGATTTGCTGCATAGTAGTAAGGGAGGGTTGTTGGATTGGCCAACAAGGTACAAGATAGCTGTGGATGCTGCAGAAGGCCTCTCTTATCTGCATCATGACTGTGTTCCCGCGATTGTTCATAGAGATGTGAAATCGAACAATATTTTGTTGGATGGGGACTATGGTGCCAGGGTGGCTGATTTTGGAGTAGCTAAGGCGGTCGAAACCACACCGAAAGGAACTAAATCCATGTCCGTCATAGCTGGCTCTTGTGGCTATATTGCACCAGAATATGCATACACGCTAAGAGTGAATGAGAAGAGCGACATATACAGTTTTGGGGTTGTCATACTCGAGTTGGTCACCGGAAAACACCCGGTGGACCCTGAATTTGGGGAGAAAGACTTGGTTAAGTGGGTGTGCACAACCTTGGACCAGAAAGGCGTGGACCATTTAATTGACTCAAGGCTTGATTCTTGTTTCAAAGAAGAAATTTGCAAGGTCTTCAACATTGGACTCATGTGCACTAGTCCTCTTCCTATCAACCGGCCTTCAATGAGAAGAGTGGTGAAGATGTTGCAAGAAGTTGGCACAGAGAACCAAACCAAGCTTTCAAAGAAAGATGGCAAGTTATCCCCTTATTACTATGATGATGTCTCAGATCATGGAAGTGTTGTTTAA 1215 0.451 MYRSSFLGNPGLCGDLKGLCDGRSEEKSVGYVWLLRTIFVVATLVFLVGVVWFYFRYKNFHDAKRAIDKSKWTLMSFHKLGFSEDEILNCLDEDNVIGSGSSGKVYKVVLSSGEVVAVKKIWGGVRKEVESGDVEKGRVQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDLLHSSKGGLLDWPTRYKIAVDAAEGLSYLHHDCVPAIVHRDVKSNNILLDGDYGARVADFGVAKAVETTPKGTKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGKHPVDPEFGEKDLVKWVCTTLDQKGVDHLIDSRLDSCFKEEICKVFNIGLMCTSPLPINRPSMRRVVKMLQEVGTENQTKLSKKDGKLSPYYYDDVSDHGSVV 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02001 404 ProSiteProfiles Protein kinase domain profile. 91 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g02001 404 SUPERFAMILY Protein kinase-like (PK-like) 86 371 IPR011009 -
Pumo6g02001 404 Pfam Protein kinase domain 93 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g02001 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Pumo6g02001 404 Gene3D Transferase(Phosphotransferase) domain 1 179 398 - -
Pumo6g02001 404 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 179 388 - -
Pumo6g02001 404 FunFam Receptor-like protein kinase HSL1 75 178 - -
Pumo6g02001 404 ProSitePatterns Protein kinases ATP-binding region signature. 97 120 IPR017441 GO:0005524
Pumo6g02001 404 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 5 374 - -
Pumo6g02001 404 Gene3D Phosphorylase Kinase; domain 1 74 178 - -
Pumo6g02001 404 SMART serkin_6 91 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02001 Pumo-Chr6 33171096 33172721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02001 1 404 Receptor kinase-like Gene Family AT1G28440 75.426 0.0 649
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pumo6g02001 Pkinase 1.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02001 - - gmx:100810256 787.719