Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01997 ATGGCTTTGGCTTCCATGAGCGAATGCAAAGCAAGTGAGGTGTTTGAAGCTCAATCTGAGTTATACAGAGTGATGTATAGTTACCTGAATCCCATGTCAGTAAAGTGGGCCATTGACCTTGGCATACCCAACATAATCCACAACCATGGCCAACCCATTACACTCTCTGACCTGGTTTCAGCTCTTGAGGTTCCACAAGCAAAAGCTACTTGTGTCCAACGCCTCATGCGCTTGTTGGCACACAATGGCTTCTTTGCAATCATCAAAATTGATGACAACAAAGAAGCATATGCATATGCTCTTACTCCAACATCACAACTCCTTGTGAGTGGCACTGATCACTGTTTATCTTCCATGGTTGAGTTGCTAAACAACCCAACTCTTCTTGGTTCATACCATCAATTGGGGAAATGGACCTTTGGGGAGGAGCACACTATCGTTGAGACTGCATTAGGTCAAGGAGGCTATTGGGATTTTATGAATCAAAACCCCACTCATATGAAGACCTTCAATGAGGCCATGGAGAGTGATTCTAACGTGGTTAGGTTGGCATTGAGAGAATGTAAATCTGTTTTTGAAGGCCTGGATTCCATAGTTGATGTTGGTGGTGGAACTGGAAACACTGCTAAGATCATTTGTGAGGCATTTCCTAACTTGAAATGCGTAGTCTTGGACCTTCCACATGTTGTTACTGGCTTAACAGGAACCAATAATCTCAGTTTTGTTGGCGGGGACATGTTCAAATTCATTCCTCAAGCTGATGCAATTTTACTCAAGTGGGTGTTACACAATTGGAGTGATGATGATTGCATAAAAATACTCAAAAACTGTAAAGATGCCGTTTCAGGCAAAGGCGAAGGAGGAAAAGTGATCATCATAGATATAGTGATAAATGAGAAGCAAGATGAACATGAGAAGACAGAGATAAAGCTTTTACTTGACGTAGCTATGATGACCATTCTCAATGGAAAAGAGAGAGATGAAAAGGATTGGAAGCGTCTTTTTATGAAAGCAGGCTTCAAATGTTACAAGATATTCCCTACATTCGGTTTTAGGTCTCTTATTGAGCTTTATCCTTAA 1080 0.413 MALASMSECKASEVFEAQSELYRVMYSYLNPMSVKWAIDLGIPNIIHNHGQPITLSDLVSALEVPQAKATCVQRLMRLLAHNGFFAIIKIDDNKEAYAYALTPTSQLLVSGTDHCLSSMVELLNNPTLLGSYHQLGKWTFGEEHTIVETALGQGGYWDFMNQNPTHMKTFNEAMESDSNVVRLALRECKSVFEGLDSIVDVGGGTGNTAKIICEAFPNLKCVVLDLPHVVTGLTGTNNLSFVGGDMFKFIPQADAILLKWVLHNWSDDDCIKILKNCKDAVSGKGEGGKVIIIDIVINEKQDEHEKTEIKLLLDVAMMTILNGKERDEKDWKRLFMKAGFKCYKIFPTFGFRSLIELYP 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01997 359 Pfam Dimerisation domain 32 80 IPR012967 GO:0046983
Pumo6g01997 359 SUPERFAMILY "Winged helix" DNA-binding domain 12 111 IPR036390 -
Pumo6g01997 359 PIRSF O-mtase 1 359 IPR016461 GO:0008168
Pumo6g01997 359 Gene3D - 3 108 IPR036388 -
Pumo6g01997 359 Pfam O-methyltransferase domain 133 341 IPR001077 GO:0008171
Pumo6g01997 359 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 115 357 IPR029063 -
Pumo6g01997 359 CDD AdoMet_MTases 198 297 - -
Pumo6g01997 359 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 22 359 IPR016461 GO:0008168
Pumo6g01997 359 Gene3D Vaccinia Virus protein VP39 110 359 IPR029063 -
Pumo6g01997 359 FunFam O-methyltransferase ZRP4 110 359 - -
Pumo6g01997 359 PANTHER O-METHYLTRANSFERASE 14 342 IPR016461 GO:0008168
Pumo6g01997 359 FunFam Coniferyl alcohol 9-O-methyltransferase 4 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01997 Pumo-Chr6 33099652 33101101 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01997 31 357 Monolignol Biosynthesis Gene Families AT5G54160 32.733 1.14e-48 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01997 K22588 K13262 gmx:100818947 457.218