Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01995 ATGGAGGGCGAGGGTTGTTCGGAGGGAGAGAATAATCGGAAGAGGGGTGGAACAGATGATGATAGCAATGAGAATAACAACAACAACAATAACGGAAGCAGTGGCAAGATTGTGAATTCTAATGAGGGGCAGAGCAAGCCCAAGCGCCAGATGAAAACCCCTTTTCAACTTGAAACCCTCGAGAAGGCTTATGCTGTGGATAATTACCCTTCGGAGACGATGAGGGCAGAGCTGTCTGAGAAATTGGGGTTGTCGGATCGGCAGCTTCAGATGTGGTTCTGTCACAGGAGATTGAAGGACAAGAAGGACTTGCCGTCTAAGAAGCCGCTGCGGAAGGTGCCAGCAGAGCCATTGCCGGATTCGCCAAGGGATGACCCCAGGTTGGGCCTTGAGCTTGCTAATGAGTATGGATCCGGGTCCGGTTCGGGTTCCAGCCCGTATGCCCGAGTGGAGCCCCTGAATGTGGTTCCTCGGGGTGTGCCTGGTTATTATGAGTCCCCACAGGCTAAGTTGGAGCTTAGAGCAATTGCTTGTGTGGAGGCGCAGTTAGGGGAGCCATTGATGGAGGATGGACCAATTCTAGGAGTAGAGTTTGATCCATTGCCACCAGATGCCTTTGGGGCACCTATAGCAGTTACAGAACAGCAGACGCTACCTAGTTTTGCCTATGACAGTAAAATATATGAAAGACATGATGCTAGAACAAATAAGGCTATGGCAAGGACATTCCGACCAAACAAGTCTGGCGTTAGGACTGATGCTTCTGGACAGTTCAGCCAATCTCATTTACATGATCCAATGGAAGGTTCTGTCAGAAATCCTCCTTTTGCACATGGAAATGAACATCTACCTAGAATTCATGCTACTCAAGGTCATTCTTCTCGTGTTCGCCATTTGTCTCAACAAGACAAGCAGTTGGTTCCCTATCAATCTCCTCGGGATGATGATGTTGCCCCCCAAAGGGAATTGTACCCAAACATAGCTAATGTTGGAAAGAACTCTCACTTTACTGATCGCCAAATTGTTGGGCCAGATAATCTCTATGCTCTACCTAGTGGACAAGTTTCGCATAACAATGCAACGCGGATTGAGAAGAAACGAAAGAGTGATGATGCCCAGGATGTTGAAGCCCATGAGATGAAAATCCGGAAAGAGATTGAGAAACAAGATAACCTTAGACGAAAGGGAGCGAAGAGAGGACAAGAAAAGAGATCGGAGAGACAAGATCGTGAGAGAAAGAAGGAAGAAGAGAGGTTGATGCGTGAGAGACAGCGAGAGGAGGAAAGAGCAAGACGTGAGCAAAAGCGTGAAATTGAAGCGAAGGGAAAAGTTTTTGCTGAAAGAAAATTTAAAAAGAAAATGAGGCAAAGAGAAGAGCTTCGCAAAGAGAGAGAAGCAGAGAGAAGGAAAGTTGCTCTTGAGAAGGCAACTGCCCGTAGAATGGCCAAGGAATCTATGGAACTTATTGAGGATGAACAGCTGGAAATGTTGGAGTTGGCTGCCTCAAGCAAGGGGTTTTCCTCTATTATCCATCTTGATTTTGATACTCTGCAACACCTTGAGTCATTTAGGGATTCATTGAGTGTTTTCCCACCAAAGAGTGTAAAGCTAAGAAAACCATTTGCAGTCAAACCCTGGATCAACTCAGAAAATAATGTTGGCAATCTTCTCATGGTTTGGAGATTTTTGATTAACTTTGCCGATGTTCTGGAGTTATGGCCTTTTACCCTAGATGAGTTTGTTCAAGCATTTCATGACTATGACTCAAGATTGTTGGGTGAGATACATGTTGCTCTTCTTAAGGTGATAATAAAAGACATTGAAGATGTAGCAAGGACACCTTCTACAGGATTAGGAACGAATCAGAATGGTGCTGGTAACTCTGGAGGTGGCCATCCAGAGATTGTGGAAGGGGCGTATGCATGGGGTTTTGACATACGAAATTGGCATAAGCACTTAAATCTATTGACATGGCCAGAAATTTTCCGACAGCTAGCATTATCTGCTGGATATGGACCACAGTTGAAGAAAAGTATTTCATGGTCATATGCAAATAATAAAGACGAGGGCAGAAGTTGTGAAGATATCATTTCTACACTTCGTAATGGTTCAGCAGCTGAAAATGCTGTTGCAAAAATGCATGAGAGAGGTCTTTTAGCCCCTCGAAGATCTAGACATCGATTAACTCCTGGTACAGTTAAGTTTGCGGCATTTCATGTTCTCTCGCTTGAGGGTGAGAAGGGATTGACAGTACTAGAACTTGCAGAAAAAATTCAGAAATCTGGTCTTCGAGACTTGACGACCAGCAAGACACCTGAGGCATCAATTTCTGTTGCTTTAACAAGAGATGCCAAGCTTTTTGAAAGAATAGCTCCATCAACATATTGTGTACGTGAGGCATTTAGAAAAAATCCTGCTGATGCTGAGTCCATTCTTTCAGAAGCAAGAAAAAAAATTCAGATATTTGAAAATGGGTTTCTAGCTGGTGAGGATGCTGATGCTGATGATGTTGAAAGAGAAGAGTCAGAAAGTGATGAAATTGATGAGGATCCTGAAGTTGATGATTTGGTAAATCCATCAAGTGCTAACAAAACATCTGAACAGTGTGATGATTTCTCATCAAATGGAAAAGAAAATTTGGTTCATGATGTTGAACTTCAAGGTGAGTTTGATAAGGATCTACCCTGTTTTCCTGAGAGTGGTTCCAAGAATGCTGATGCTCCAATTGCTGTTACTGGACAATCTGGTGCTTGTGAAGATCTGAATGTTGGAAATCTTGGTGGAGATAATATGGAAATTGATGAAAGCAAGCCTGGAGAGTCGTGGGTTCAAGGGCTTGCAGAAGGAGAATATTCTGATCTCAGTGTAGAGGAGCGTCTAAATGCTCTTGTTGTGTTGGTTGGTGTGGCAAATGAAGGAAATTCAATCCGTCTTGTTCTTGAGGATCGTTTGGAAGCAGCAAATGCTCTGAAGAAACAAATGTGGGCAGAAGCACAACTAGATAAAGTTCGCCTAAAAGATGATACTTTCAGTAAATCCGATTTTCCATCTATCAATGGGAATAAAGTTGAAATACAATACTCTTGTCCTGTCACGGAGGGCAAGCAAAGCCCATTGCTTGGAATTAATATTGGCAACAATAATAATAATGTGCTTTCTCCCAGCATTACAGAAAATCAAAAAGCAGCTTCTGGTGCACAGAGCCTGTCTATTGAAAAGCACTCTTCAGTTCAAGATCTCTACACTGGTCCAGATAACCCTCAGACTCAGTCATTTGTACAATATTCAAAAAGGTCACGTTCTCAGTGGAAATCTTATATTTCCCACGTAGCGGAAGAGATGTATGTCTACAGATCCTTACCCCTTGGGCAAGATCGCAGACGTAACCGTTATTGGCAATTTGTTGCATCTGCTTCTTCCAATGATCCTGGTTCTGGCAGGATCTTTCTTGAATATCTTGATGGCAATTGGAGGCTTATTGATACTGAAGAGGCCTTTGATGCGCTTCTGAATTCACTTGATTCACGTGGGATCAGGGAATCTCATTTGCGTCTAATGTTGCAAAAGGTTGAGAGTTCCTTTAAGGAAAATGTTCGTAAGATTACACAATGTTCCAAAATTGGAAGCATAAGTGAAACATGTGTTAAAAATGAAGCCGATGAAACAGATTCCAGTCCTGATCGACACACTGGATCTGACAGTCCTAGCAGTACCCTTTGTGGCTTAAACTCTGACACTTCAGAAACTTCATCATCCTTCAAAATTGAGCTTGGGAAAAGTGAGAGCGACAAGAAATCTGCCTTGAGAAGGTATCAAGAATTTCAAAAATGGACGTGGAAAGAATGCTATAACTCATCAATATTGTGTGCAATGAAATATGGGAAGAAGAGATGCAAACCTCAGGTTGTCCTCTGTGATATCTGTCTCAACCCTTATTTCTTTGAAGACTCCCATTGCAGTGGTTGCCACCGGACATTTCCCTCAAATAATGGATTTAATTTTTCTAAACATGCATTTCAATGTGGAGACAAATTATCGAAAGATATTTGTATTTTGGATTCTTCCCTTCCTTTACGGACAAGATTGCTTAAGGCCATGCTAGCTTTTATTGAGGTATCTGTTCCGCCTGAAGCGTTTCAATCAAATTGGACAGAAGATATTAGGAGGCATTGGAGTATGAAGTTGAGCAAATCATCTTCTGTTGAGGAACTGCTACAGATATTGACCCTACTTGAGAGAGCATTTAAGCGAGACTTTTTATCATCAACCTTCTCTACAACAGGGGAACAGTTGGGGTTGAACAGTATGTCAGAGAGTGCTGCACAAACCTCTACTGATCCTGAATCAGTTGCTGTACTTCCATGGGTTCCACTGACCACTTCAGCTGTGTCTCTCAGACTTTTAGAGTTTGATGCATCCATTGTCTACGTACCACATGAGAAACCTGAACCTTGTGAGGAGAAAGAAGATAGGGTATACATAAAGCTTCCTTCAAGATATAAACCTTCTAAATCTAGTAAAGTGGCGGAAGCAGCAGACTTGGACCGTGATGAATTCATGAAAGTTAAATCTACTCCTGTGAAAATTGTGCAAAGCAACAATAAAAGAGGACGAGGGAGTCGTGATAAAGGACGGGGTAAAAAGGTATCTAAAACCAAACAAAATACTGGCCGTCGTAGTGCCAAGGTTGCTGGGAATACAAGTCAAAGGATAAAACAACAGGGAGTGGGATCACAAGGACAAGCTGGTGGACGTGGTCGCCGAACAGTTAGGAAAAGAAGAGTGGGGAAGAAGGCTGTTGAAGATTTGTTGCTGGGCCATAGGGGTGCCACTCATAACTCCAGCATTGGCAGAGAATCATTGAGAAGCTTGGATGAGGACTGGGATGATGAAAAGGCAAGTACCCATGACTCCCATCCACATGGGGGCTGCTAA 4935 0.4292 MEGEGCSEGENNRKRGGTDDDSNENNNNNNNGSSGKIVNSNEGQSKPKRQMKTPFQLETLEKAYAVDNYPSETMRAELSEKLGLSDRQLQMWFCHRRLKDKKDLPSKKPLRKVPAEPLPDSPRDDPRLGLELANEYGSGSGSGSSPYARVEPLNVVPRGVPGYYESPQAKLELRAIACVEAQLGEPLMEDGPILGVEFDPLPPDAFGAPIAVTEQQTLPSFAYDSKIYERHDARTNKAMARTFRPNKSGVRTDASGQFSQSHLHDPMEGSVRNPPFAHGNEHLPRIHATQGHSSRVRHLSQQDKQLVPYQSPRDDDVAPQRELYPNIANVGKNSHFTDRQIVGPDNLYALPSGQVSHNNATRIEKKRKSDDAQDVEAHEMKIRKEIEKQDNLRRKGAKRGQEKRSERQDRERKKEEERLMRERQREEERARREQKREIEAKGKVFAERKFKKKMRQREELRKEREAERRKVALEKATARRMAKESMELIEDEQLEMLELAASSKGFSSIIHLDFDTLQHLESFRDSLSVFPPKSVKLRKPFAVKPWINSENNVGNLLMVWRFLINFADVLELWPFTLDEFVQAFHDYDSRLLGEIHVALLKVIIKDIEDVARTPSTGLGTNQNGAGNSGGGHPEIVEGAYAWGFDIRNWHKHLNLLTWPEIFRQLALSAGYGPQLKKSISWSYANNKDEGRSCEDIISTLRNGSAAENAVAKMHERGLLAPRRSRHRLTPGTVKFAAFHVLSLEGEKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDAKLFERIAPSTYCVREAFRKNPADAESILSEARKKIQIFENGFLAGEDADADDVEREESESDEIDEDPEVDDLVNPSSANKTSEQCDDFSSNGKENLVHDVELQGEFDKDLPCFPESGSKNADAPIAVTGQSGACEDLNVGNLGGDNMEIDESKPGESWVQGLAEGEYSDLSVEERLNALVVLVGVANEGNSIRLVLEDRLEAANALKKQMWAEAQLDKVRLKDDTFSKSDFPSINGNKVEIQYSCPVTEGKQSPLLGINIGNNNNNVLSPSITENQKAASGAQSLSIEKHSSVQDLYTGPDNPQTQSFVQYSKRSRSQWKSYISHVAEEMYVYRSLPLGQDRRRNRYWQFVASASSNDPGSGRIFLEYLDGNWRLIDTEEAFDALLNSLDSRGIRESHLRLMLQKVESSFKENVRKITQCSKIGSISETCVKNEADETDSSPDRHTGSDSPSSTLCGLNSDTSETSSSFKIELGKSESDKKSALRRYQEFQKWTWKECYNSSILCAMKYGKKRCKPQVVLCDICLNPYFFEDSHCSGCHRTFPSNNGFNFSKHAFQCGDKLSKDICILDSSLPLRTRLLKAMLAFIEVSVPPEAFQSNWTEDIRRHWSMKLSKSSSVEELLQILTLLERAFKRDFLSSTFSTTGEQLGLNSMSESAAQTSTDPESVAVLPWVPLTTSAVSLRLLEFDASIVYVPHEKPEPCEEKEDRVYIKLPSRYKPSKSSKVAEAADLDRDEFMKVKSTPVKIVQSNNKRGRGSRDKGRGKKVSKTKQNTGRRSAKVAGNTSQRIKQQGVGSQGQAGGRGRRTVRKRRVGKKAVEDLLLGHRGATHNSSIGRESLRSLDEDWDDEKASTHDSHPHGGC 1644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01995 1644 Pfam HB1, ASXL, restriction endonuclease HTH domain 731 799 IPR007759 GO:0006355
Pumo6g01995 1644 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1118 1190 IPR028941 -
Pumo6g01995 1644 MobiDBLite consensus disorder prediction 103 145 - -
Pumo6g01995 1644 Coils Coil 375 395 - -
Pumo6g01995 1644 MobiDBLite consensus disorder prediction 1525 1644 - -
Pumo6g01995 1644 MobiDBLite consensus disorder prediction 1619 1644 - -
Pumo6g01995 1644 MobiDBLite consensus disorder prediction 830 876 - -
Pumo6g01995 1644 MobiDBLite consensus disorder prediction 103 130 - -
Pumo6g01995 1644 MobiDBLite consensus disorder prediction 360 435 - -
Pumo6g01995 1644 Coils Coil 398 441 - -
Pumo6g01995 1644 Coils Coil 443 477 - -
Pumo6g01995 1644 ProSiteProfiles HARE-type HTH domain profile. 731 800 IPR007759 GO:0006355
Pumo6g01995 1644 MobiDBLite consensus disorder prediction 293 308 - -
Pumo6g01995 1644 MobiDBLite consensus disorder prediction 347 435 - -
Pumo6g01995 1644 MobiDBLite consensus disorder prediction 830 855 - -
Pumo6g01995 1644 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 939 978 IPR028942 -
Pumo6g01995 1644 MobiDBLite consensus disorder prediction 248 266 - -
Pumo6g01995 1644 MobiDBLite consensus disorder prediction 246 317 - -
Pumo6g01995 1644 Pfam DDT domain 552 606 IPR018501 -
Pumo6g01995 1644 Gene3D - 30 104 - -
Pumo6g01995 1644 MobiDBLite consensus disorder prediction 1540 1555 - -
Pumo6g01995 1644 MobiDBLite consensus disorder prediction 858 875 - -
Pumo6g01995 1644 CDD homeodomain 48 102 IPR001356 GO:0003677
Pumo6g01995 1644 ProSiteProfiles 'Homeobox' domain profile. 43 103 IPR001356 GO:0003677
Pumo6g01995 1644 MobiDBLite consensus disorder prediction 1229 1249 - -
Pumo6g01995 1644 SUPERFAMILY Homeodomain-like 33 102 IPR009057 -
Pumo6g01995 1644 MobiDBLite consensus disorder prediction 1 56 - -
Pumo6g01995 1644 MobiDBLite consensus disorder prediction 1 21 - -
Pumo6g01995 1644 MobiDBLite consensus disorder prediction 1556 1580 - -
Pumo6g01995 1644 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 28 1636 IPR044977 GO:0006357
Pumo6g01995 1644 MobiDBLite consensus disorder prediction 1218 1249 - -
Pumo6g01995 1644 CDD UDM1_RNF168_RNF169-like 459 499 - -
Pumo6g01995 1644 SMART testlast3 550 609 IPR018501 -
Pumo6g01995 1644 ProSiteProfiles DDT domain profile. 550 609 IPR018501 -
Pumo6g01995 1644 Pfam Homeodomain 46 102 IPR001356 GO:0003677
Pumo6g01995 1644 SMART HOX_1 45 107 IPR001356 GO:0003677
Pumo6g01995 1644 MobiDBLite consensus disorder prediction 22 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01995 Pumo-Chr6 33008857 33017496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01995 39 1593 Homeobox Transcription Factor Family AT1G28420 48.474 0.0 1282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pumo6g01995 WSD 1.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01995 - - gmx:100818817 2728.74