Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01949 ATGTGCTTTTCTGCATTTGCTTCTTCTGAGATTGCTTCAGAAGCAAATGCTTTGTTGAAGTGGAAAGCCAGTCTTGACAACCAAAGTCAAGCTTCTCTCTCTTCATGGACTGGCAATAATCCTTGCAATTGGCTCGGAATTGCATGTCATGACTCCAATTCTGTTTCCAACATCAATCTTACAAATGTTGGATTAAGAGGTACGCTTCAAAGTCTCAACTTCTCATTACTTCCAAACATTCTCACTCTAAATATGAGTCACAACTCCTTGAATGGAAGTATTCCTCCTCAAATTGGGGCCTTGTCCAATCTCAACACTCTTGATTTGTCCACTAATAAACTCTTTGGTAGCATTCCCAATACCATTGGTAATCTGTCCAAACTACTATATCTTAATCTTAGTACCAATGGTCTCTCTGGTACTATTCCTTCTGAAATAGTACAGTTGGTTGGTCTTCAAACATTGCTCATGGGTGATAATAAATTCACTGGATCCCTTCCTCAAGAAATAGGCAGATTGATGAATCTGAGAATACTTGGTATTCCTCGGTCCAATCTCTCAGGGACTATCCCAATCTCTATAGAAAAGTTAAGCAATTTGTCTCATCTAGATGTAGAAAGCAACAACCTTTATGGCAACATTCCTCATGGAATTTGGCATATGGACCTAAAGTTTTTGTCACTTGTAGTTAATAAATTCAATGGTTCCCTACCCAAAGAAATTGGGAAGTTAAGGAACCTAGAGATTCAATGGCTTAGGAATAGTGGCCTTTCTGGCTCCATACCCGAAGAAATTGGGATGTTGGGGAATCTAATACATCTTGACATGAGCCAATGTAATTTCAGCGGGTCTATCCCTCGTGAAATTGGAAATTTGTCCAAACTCTCGGATCTTGTTATTCATGACAGTGGTCTCTCTGGGACTATTCCTCGTGAAATTGGGCAGTTAAGGAATCTAGAGATGCTATATCTTTGGAACATTGGCCTTTCTGGCTCCATACCCGAAGAAATTGGGATGTTGGGGAATCTAATAGGGGTTGGGATGGGTGATTGTAATTTCAGTGGGTCTATCCCTCGTGAAATTGGAAATTTGTCCAAACTCTCTGATCTTGTTTTTCATGATTGTGGTCTCTCTGGGACTATTCCTCGTGAAATTGGGAAGTTAAGGAATCTAGAAAATCTACTGTTATATAACAACCAACTTTTTGGTCACATTCCTCTTGAAATTGGGAATTTCTCTGGTTCTATTCCTGATGAACTGGGAAATCTCCATTCTCTTGTCACAATCCAATTGACGAGCAACAACCTCTCAGGACCAATTCCTTCCACTATTGGAAATTTAACAAATGTCAGGGAATTATTATTAAATGAAAATGAGCTTGGTGGCAAGTTTCCAATAGAAATGAACAGGCTTACTGTTATGGAGAGATTACAGCTAGCGGATAATAATTTTATAGGCCAGTTACCTCAAAACATTTGCATTGGTGGAAAGTTGAAAAATTTTTCTGCTAGTAATAACCATTTCATAGGTCCGATTCCAGAGAGTTTGAAAAATTGCTTCAGCCTTATAAGAGTCAGGCTTCAGCAAAACCAACTAACTGGGGATATAACAGATGCTTTTGGTGTACTTCCAAACTTGGACTACATCGAATTGAGTGACAATAATTTTTATGGTCAACTTTCACCTAACTGGGGAAAGTTCAGTAGCCTCACAAGCCTCATGATCTCCAACAATAATTTATCAGGTGTTATACCACCAGAACTAGCTGGGGCAACCAAATTACAACGGCTTCACCTATCCTCAAACCATCTTACAGGAAACATGCCACAAGATCTATGTAACTTGACCTTGTTTGATCTCAAAATCAACAACAATGATCTTTCAGGAAATGTTCCCATAGAAGTAGCATCAATGAAGCAACTTCAATTTTTGGACCTTGGATCAAATAATTTGAGTGGATTAATCCCAAATCAACTTGGAAATTTGCCCAATTTATTGAACATGAATCTGAGCCAAAATATATTTCAGGGAAATATTCCTTCAGAGCTTGGCAAATTGAAATTTCTTACAAGTCTTGATCTTAGTGGAAATTCTTTGAGAGGAACAATACCACCAATGCTTGGAGAGTTGAAAAGCTTAGAAACTTTGAATCTCTCTCACAATAATCTTTCAGGTGATCTCTCTAGCTTTGATGATATGATAAGCTTGACATCTATTGATATATCATACAACCAATTTGAGGGTCCACTTCCAAACATTCTAGCCTTCCACAATGCTACAATTGAAGCATTGAGAAATAATAAAGGCTTGTGTGGCAATGTCACTGGCTTGAAGCCTTGCCCAACATTAAGTGGGAAATCTCATAATCACATGAGAAAGAAGGTCATAACAGTAGTTTTACCCCTTACGTTTGGAACTCTAATACTGGCATTATTTGCTTTCGGAGTCTTGTATCATTTTTGCCAAACATCAACAAAAAAAGAAGACCAGCCTACAAATTTACAAACTCCAAACATATTTGCAATATGGAGTTTTGATGGCAAAATGATATTCGAGAATATTATTGAAGCCACAGAAAATTTTGACAACAAACATCTCATTGGGGTTGGAGGGCAAGGATGTGTTTACAAAGCAGTGTTGCCTACAGGTCAAGTTGTTGCTGTGAAGAAACTCCATTCAGTTCCAAATGAAGAATTGGTCAATCTAAAAGCTTTCACAAGTGAGATCCAAGCTTTGACAGAAATTCGACATCGTAACATAGTAAAGTTATATGGGTTTTGCTTGCATTCACAATTCTCATTTTTGGTGTGTGAATTCCTGGAGAATGGCAGTGTTGAGAAGATTCTGAAGAATGATGAGCAAGCAATTGCGTTTGATTGGAATAAGAGGGTGAATGTTGTTAAAGATGTAGCAAATGCTTTATGTTATATGCATCATGATTGCTCACCTCCAATTGTTCATCGTGATATATCAAGCAAGAATGTTCTTTTGGATTCAGAATATGTAGCTCATGTCTCAGACTTCGGAACAGCCAAGTTTCTTGATCCAAATTCATCCAATTGGACCTCATTCGTAGGAACCTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAGGTTAATGAGAAATGTGACGTGTTTAGTTTTGGGGTCCTAGCATGGGAAATACTTTTAGGAAAGCACCCTGGTGACATTATATCTTCTTTATTGCTAACATCTTCATCAACTGCTGTGGCCTCAACACTTGATCATATGGCATTGATGGATAAGTTGGACCAACGTCTCCCTCATCCAACAAGGCCTATTGTTAAGGAGGTAGCATCAATAGCGAAGATAGCAATTGCCTGCTTGACTGAAAGTCCACAATCTCGCCCTACCATGGAGCAGGTTGCCAATGAGCTAGTCATGTAA 3414 0.3858 MCFSAFASSEIASEANALLKWKASLDNQSQASLSSWTGNNPCNWLGIACHDSNSVSNINLTNVGLRGTLQSLNFSLLPNILTLNMSHNSLNGSIPPQIGALSNLNTLDLSTNKLFGSIPNTIGNLSKLLYLNLSTNGLSGTIPSEIVQLVGLQTLLMGDNKFTGSLPQEIGRLMNLRILGIPRSNLSGTIPISIEKLSNLSHLDVESNNLYGNIPHGIWHMDLKFLSLVVNKFNGSLPKEIGKLRNLEIQWLRNSGLSGSIPEEIGMLGNLIHLDMSQCNFSGSIPREIGNLSKLSDLVIHDSGLSGTIPREIGQLRNLEMLYLWNIGLSGSIPEEIGMLGNLIGVGMGDCNFSGSIPREIGNLSKLSDLVFHDCGLSGTIPREIGKLRNLENLLLYNNQLFGHIPLEIGNFSGSIPDELGNLHSLVTIQLTSNNLSGPIPSTIGNLTNVRELLLNENELGGKFPIEMNRLTVMERLQLADNNFIGQLPQNICIGGKLKNFSASNNHFIGPIPESLKNCFSLIRVRLQQNQLTGDITDAFGVLPNLDYIELSDNNFYGQLSPNWGKFSSLTSLMISNNNLSGVIPPELAGATKLQRLHLSSNHLTGNMPQDLCNLTLFDLKINNNDLSGNVPIEVASMKQLQFLDLGSNNLSGLIPNQLGNLPNLLNMNLSQNIFQGNIPSELGKLKFLTSLDLSGNSLRGTIPPMLGELKSLETLNLSHNNLSGDLSSFDDMISLTSIDISYNQFEGPLPNILAFHNATIEALRNNKGLCGNVTGLKPCPTLSGKSHNHMRKKVITVVLPLTFGTLILALFAFGVLYHFCQTSTKKEDQPTNLQTPNIFAIWSFDGKMIFENIIEATENFDNKHLIGVGGQGCVYKAVLPTGQVVAVKKLHSVPNEELVNLKAFTSEIQALTEIRHRNIVKLYGFCLHSQFSFLVCEFLENGSVEKILKNDEQAIAFDWNKRVNVVKDVANALCYMHHDCSPPIVHRDISSKNVLLDSEYVAHVSDFGTAKFLDPNSSNWTSFVGTFGYAAPELAYTMEVNEKCDVFSFGVLAWEILLGKHPGDIISSLLLTSSSTAVASTLDHMALMDKLDQRLPHPTRPIVKEVASIAKIAIACLTESPQSRPTMEQVANELVM 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01949 1137 Gene3D Phosphorylase Kinase; domain 1 821 939 - -
Pumo6g01949 1137 Gene3D Ribonuclease Inhibitor 253 343 IPR032675 -
Pumo6g01949 1137 PANTHER LEUCINE RICH REPEAT KINASE 2 411 1137 - -
Pumo6g01949 1137 SUPERFAMILY Protein kinase-like (PK-like) 839 1135 IPR011009 -
Pumo6g01949 1137 SUPERFAMILY RNI-like 57 305 - -
Pumo6g01949 1137 Gene3D Ribonuclease Inhibitor 344 411 IPR032675 -
Pumo6g01949 1137 Gene3D Ribonuclease Inhibitor 412 474 IPR032675 -
Pumo6g01949 1137 ProSiteProfiles Leucine-rich repeat profile. 712 734 IPR001611 GO:0005515
Pumo6g01949 1137 ProSiteProfiles Protein kinase domain profile. 861 1137 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01949 1137 FunFam MDIS1-interacting receptor like kinase 2 isoform A 11 166 - -
Pumo6g01949 1137 Gene3D Transferase(Phosphotransferase) domain 1 940 1137 - -
Pumo6g01949 1137 FunFam MDIS1-interacting receptor like kinase 2 940 1137 - -
Pumo6g01949 1137 SUPERFAMILY L domain-like 546 779 - -
Pumo6g01949 1137 FunFam Uncharacterized protein 493 789 - -
Pumo6g01949 1137 FunFam Leucine-rich repeat receptor protein kinase EMS1 410 491 - -
Pumo6g01949 1137 SMART serkin_6 861 1137 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01949 1137 PRINTS Leucine-rich repeat signature 689 702 - -
Pumo6g01949 1137 PRINTS Leucine-rich repeat signature 710 723 - -
Pumo6g01949 1137 Gene3D Ribonuclease Inhibitor 10 161 IPR032675 -
Pumo6g01949 1137 Gene3D Ribonuclease Inhibitor 162 252 IPR032675 -
Pumo6g01949 1137 Pfam Leucine rich repeat N-terminal domain 12 49 IPR013210 -
Pumo6g01949 1137 SMART LRR_typ_2 149 173 IPR003591 -
Pumo6g01949 1137 SMART LRR_typ_2 388 412 IPR003591 -
Pumo6g01949 1137 SMART LRR_typ_2 567 591 IPR003591 -
Pumo6g01949 1137 SMART LRR_typ_2 471 495 IPR003591 -
Pumo6g01949 1137 SMART LRR_typ_2 77 100 IPR003591 -
Pumo6g01949 1137 SMART LRR_typ_2 638 661 IPR003591 -
Pumo6g01949 1137 SMART LRR_typ_2 592 615 IPR003591 -
Pumo6g01949 1137 SMART LRR_typ_2 268 292 IPR003591 -
Pumo6g01949 1137 SMART LRR_typ_2 423 447 IPR003591 -
Pumo6g01949 1137 SMART LRR_typ_2 686 710 IPR003591 -
Pumo6g01949 1137 SMART LRR_typ_2 197 221 IPR003591 -
Pumo6g01949 1137 SMART LRR_typ_2 101 125 IPR003591 -
Pumo6g01949 1137 SUPERFAMILY RNI-like 252 614 - -
Pumo6g01949 1137 FunFam Leucine-rich repeat receptor protein kinase MSP1 824 939 - -
Pumo6g01949 1137 ProSitePatterns Tyrosine protein kinases specific active-site signature. 985 997 IPR008266 GO:0004672|GO:0006468
Pumo6g01949 1137 Pfam Leucine rich repeat 689 746 IPR001611 GO:0005515
Pumo6g01949 1137 Gene3D Ribonuclease Inhibitor 475 782 IPR032675 -
Pumo6g01949 1137 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 218 409 - -
Pumo6g01949 1137 Pfam Protein kinase domain 862 1134 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01949 Pumo-Chr6 31391909 31395670 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01949 521 786 Receptor kinase-like Gene Family AT4G08850 37.546 5.43e-38 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pumo6g01949 Pkinase 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01949 - - gmx:100808316 1603.19