Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01942 ATGGACACAACAAGCAGGTCTGAGGGGAAGAGGGTCTTGAGGTACAAAGAGGAAGATGATGATCATGAATTAGAAGAAGAAGAAGAGGAAGAGGTGAATGCTGAGATGGGTTTTGGAGAAGAAGATGGAAGGAGGAATAAGAGAGCAATGATGACAGATCTCTATGGAAAGAGAGGGTCCAAAGGTGGAAGCTCAATGCCACCTTCTTGTCAAGTGGATAATTGTGATGCTGATCTGAGTGAAGCTAAGCAGTATCATAGAAGACACAAGGTTTGTGAGTACCATGCCAAGGCTCATTCCGTACACATGGCAGGGCAGCAACAAAGGTTTTGCCAACAATGTAGCAGATTCCATGAGCTATCAGAATTTGATGACTCAAAGAGGAGTTGTAGAACGAGGTTGGCTGGGCATAATGAGAGGCGTCGCAAGAATGCAGTTGACTACCAGGGAGAATGA 456 0.4518 MDTTSRSEGKRVLRYKEEDDDHELEEEEEEEVNAEMGFGEEDGRRNKRAMMTDLYGKRGSKGGSSMPPSCQVDNCDADLSEAKQYHRRHKVCEYHAKAHSVHMAGQQQRFCQQCSRFHELSEFDDSKRSCRTRLAGHNERRRKNAVDYQGE 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01942 151 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 44 145 IPR044817 GO:0003677
Pumo6g01942 151 MobiDBLite consensus disorder prediction 1 47 - -
Pumo6g01942 151 ProSiteProfiles Zinc finger SBP-type profile. 67 144 IPR004333 GO:0003677
Pumo6g01942 151 Coils Coil 15 35 - -
Pumo6g01942 151 PIRSF SBP 7 151 IPR017238 GO:0003677|GO:0003700|GO:0009908
Pumo6g01942 151 Gene3D - 60 131 IPR036893 GO:0003677|GO:0005634
Pumo6g01942 151 MobiDBLite consensus disorder prediction 20 36 - -
Pumo6g01942 151 SUPERFAMILY SBT domain 68 148 IPR036893 GO:0003677|GO:0005634
Pumo6g01942 151 MobiDBLite consensus disorder prediction 1 19 - -
Pumo6g01942 151 FunFam Squamosa promoter-binding-like protein 14 61 131 - -
Pumo6g01942 151 Pfam SBP domain 70 143 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01942 Pumo-Chr6 31199786 31203069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01942 63 147 SBP-box Gene Family AT2G33810 67.059 7.07e-39 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pumo6g01942 SBP 1.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01942 - - gmx:100527199 219.55