Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01938 ATGTGCCGTTCGGGCATTTTGGGACAAGAGGATCTCCCCGAGGTCCTCGGTGACACCCTGGGTGAGGTATGTTCATTAGCTGGAAATCTTATATCAATGTATGTTCCTATTCTTTTAAGAGCATTAAGAAATGATCTATTAACCCATAAAATTTTGCTACTGAAGGAGTTTAAAGGATATGTTTTCAAAATCACTGGTGGGTATGACAAACAAGGATTCCCAATGAAGCAGGGAATGCTGACCCCTAGTTGTGTCCTACTCTTGCTCCATAGAGAAGCAGCAGAGTATCAAAAACTTCTTGCTTCCAGATTGAAGGAGCAGAGAGAACGCCGCGCCGGAGTGAGAGCTTGGCCAAGCGGAGATCCAAACTTTCCAGTGCTACTTCCAAACCAACTGTCACAGCATAGGCTGTTGTTTTCTGGTAGGGATATGGTGAAGTTTAAACTTCACTGTAGTTTTTGGTAG 465 0.4387 MCRSGILGQEDLPEVLGDTLGEVCSLAGNLISMYVPILLRALRNDLLTHKILLLKEFKGYVFKITGGYDKQGFPMKQGMLTPSCVLLLLHREAAEYQKLLASRLKEQRERRAGVRAWPSGDPNFPVLLPNQLSQHRLLFSGRDMVKFKLHCSFW 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01938 154 SMART Ribosomal_S6e_2 33 129 IPR001377 GO:0003735|GO:0005840|GO:0006412
Pumo6g01938 154 Pfam Ribosomal protein S6e 55 98 IPR001377 GO:0003735|GO:0005840|GO:0006412
Pumo6g01938 154 ProSitePatterns Ribosomal protein S6e signature. 64 75 IPR018282 GO:0003735|GO:0005840|GO:0006412
Pumo6g01938 154 PANTHER 40S RIBOSOMAL PROTEIN S6 22 92 IPR001377 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01938 Pumo-Chr6 31136597 31140038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01938 39 91 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 62.500 6.48e-15 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01938 K02991 - gmx:100792949 70.8626