Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01937 ATGGAAAAGTTTTCTCAGCGAGTTTCGAGAAAAAAAACCAACCGATCATCATCAATCACCACCACTGGCAGCAGCAGCAGCTCTAACTCATCGCCCTCACCAAACCCAACAAGCCTTGTTCCACAACAAAACATGGGTTATTATCCTCAAAATGTTAACTTCCCTCACCACAACACTAGTGGACAACTTGGCTTTCCTACTCAACAACCCTATTATCTCGTTCCATATGATCATCAGAACATGCAGTTCCAGAATGTGCCTTCATCATTCCCCCAAGTGATGATGAATCAGGCTCCTTTGTATCCCTTTCCAACGGGGCAAAGTGGTGTACCCTATGGAATGCCAAATTCTGAAGTTCAAGGTTTTGGGGAAAAAGAAAAAAACGAGAGGGTGGAGGAGACATGGAAGTGGAAAGTTAATAGAGAGTTTAGGAGACAAGTGAGACAACAAAGGAGTCAAAATCCTACTCCTGTGGCTCCTTCGGTTCCAGAAGGGACAAGAAGGGAACAATCTGTTCCTAGTGGTGGAGGGTCAAAGGTTAGGATCACAGTCAAACCAAACAGGCCAACCAAAGTTTTTTACACCCCAGATGGGAAGATGCTAGAAGAAATTTTGACAAAGCACTTAAGGAACAGTGACGTTAGCGTCCTAGGCCGCATTGTGCTCCCAAAGAGGGATGCTGAGGATAAGCTTCCGGCACTGCTAAACAAGGAAGGAATCGACATTGTGCTCAAGGATGTATATTCTGGGATGGAATGGAGCATCAAATACAGGTACTGGACTAATAATCTCAGCCGAATGTATGTTCTAGAAAATGCAGGGGATTTTGTGAACCATTATAAACTTCAAACGGGAGATTCTATAATCCTTTACGAGGACGAGTTGAAAAATCTGTATGTGAGGACCAAAAAGGTTCAGCGAAATGTGGAGCAATCTGTGCCCTTGTCAAACATGGGAATGATGCATCCATACGGCACTCAAAACTACAAAGATGAAGCTGATGCATATTTGGCTTACTTGATCAAAGAGTTTAGCCATAAGAGGGAAGCTGAAGCTGCTGCTAATAAGAGCCTTTTGATCAACCCGTGCATGAATGGTGGTGGAAGTTCTTCAAGTGGAACAAAGAAAGATAACATAGTGGAACATCAATTCATGCTGAACAATGTTGCTGAGGAAGAGGAGGCACCAAATCAAGCACCCCAATTGCATCAATTCATGCCCAACAACAATGCTAAGGAAGAGGCACCAAACCAAGGAACCCAAGAAGCTGCAGCAGCAGCACCCCAACAAAACAACAACGTTGTTAACGTTGACGATGATGATGCTGTCTATGGGGACCTTGACAATATCTTTGAAATTGGGCACAATTATTATGATCTTAAGATGTGGTAG 1392 0.4353 MEKFSQRVSRKKTNRSSSITTTGSSSSSNSSPSPNPTSLVPQQNMGYYPQNVNFPHHNTSGQLGFPTQQPYYLVPYDHQNMQFQNVPSSFPQVMMNQAPLYPFPTGQSGVPYGMPNSEVQGFGEKEKNERVEETWKWKVNREFRRQVRQQRSQNPTPVAPSVPEGTRREQSVPSGGGSKVRITVKPNRPTKVFYTPDGKMLEEILTKHLRNSDVSVLGRIVLPKRDAEDKLPALLNKEGIDIVLKDVYSGMEWSIKYRYWTNNLSRMYVLENAGDFVNHYKLQTGDSIILYEDELKNLYVRTKKVQRNVEQSVPLSNMGMMHPYGTQNYKDEADAYLAYLIKEFSHKREAEAAANKSLLINPCMNGGGSSSSGTKKDNIVEHQFMLNNVAEEEEAPNQAPQLHQFMPNNNAKEEAPNQGTQEAAAAAPQQNNNVVNVDDDDAVYGDLDNIFEIGHNYYDLKMW 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01937 463 ProSiteProfiles B3 DNA-binding domain profile. 205 306 IPR003340 GO:0003677
Pumo6g01937 463 MobiDBLite consensus disorder prediction 11 62 - -
Pumo6g01937 463 Pfam B3 DNA binding domain 207 301 IPR003340 GO:0003677
Pumo6g01937 463 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 133 390 IPR044800 GO:0003700
Pumo6g01937 463 MobiDBLite consensus disorder prediction 146 183 - -
Pumo6g01937 463 SUPERFAMILY DNA-binding pseudobarrel domain 204 300 IPR015300 -
Pumo6g01937 463 SMART B3_2 205 306 IPR003340 GO:0003677
Pumo6g01937 463 CDD B3_DNA 204 300 IPR003340 GO:0003677
Pumo6g01937 463 MobiDBLite consensus disorder prediction 402 432 - -
Pumo6g01937 463 MobiDBLite consensus disorder prediction 1 62 - -
Pumo6g01937 463 Gene3D - 194 312 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01937 Pumo-Chr6 31094018 31096886 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01937 195 299 B3 DNA Binding Superfamily AT1G28300 57.143 6.10e-33 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo6g01937 B3 7.8e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01937 K09287 - gmx:102662409 351.288