Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01936 ATGGCCGCACCTTCCCTCTCCTCCGCTCTCAACTCCCTCTCCTCTCTCTCCCTCTCCACCTCCTCCCGCTTCTCTCTCCTCCCTCACAACCTCTCCCACAGGCCCTCCCTCCTCTCCAAACCTCTCCACCTCTCCGCCACCCTCAAATCCAAACCCTCCGACGACATCGACACCTCCTTCTTCGACAACGTCAACCCGCAAGATGACATCACGTTCAATCCCCCGGAGCCCCCGGAGGGCTTCGTCCCGCCCCCGTCCTTCGACGACGGCCCCCTGGAGGGCGAGGACGAGATCGCCGCCGCCTACGAGGAGCTCTACGGCCCCGGCTACAGCGGCGTCTCGCTCCTCGGCAACGACGTCTACGTCATGGACGCCAAGGTCAAGAAGGAGACTGGGTTCGGCTCCGGCGCCAAGAAGGAGAAGGTTAGGGACGGGTTCGAGGAGAGGGTCGTGCAGGTCAGGAGGGTCACCAAGGTCGTCAAGGGAGGGAAACAGCTCAGGTTTAGAGCCGTCGTCGTCGTCGGCGACAAGAAGGGCCAGGTAGGTGTCGGAGTTGGCAAGGCCAAGGAAGTCATTGCCGCCGTTCAGAAGTCTGCCGTCAATGCCAGGAGGAACATCATCAAGGTGCCTATGACTAAGTACTCCACTTTCCCCCATAGAGCTGATGGAGATTATGGAGCGGCAAAGGTGATGCTTAGACCTGCTTCTCCCGGTACCGGAGTTATTGCAGGTGGGTCTGTGAGAATTGTTCTTGAAATGGCAGGAGTTGACAATGCTTTGGGAAAGCAACTAGGGAGTAATAATGCACTCAACAATGCCAGAGCGACCATTGTTGCTGTGCAGAAAATGAAGCAGTTTCGTGAGGTTGCTGAGGAGCGTGGGATTCCAATGGAAGAATTATGGAAGTAA 909 0.5765 MAAPSLSSALNSLSSLSLSTSSRFSLLPHNLSHRPSLLSKPLHLSATLKSKPSDDIDTSFFDNVNPQDDITFNPPEPPEGFVPPPSFDDGPLEGEDEIAAAYEELYGPGYSGVSLLGNDVYVMDAKVKKETGFGSGAKKEKVRDGFEERVVQVRRVTKVVKGGKQLRFRAVVVVGDKKGQVGVGVGKAKEVIAAVQKSAVNARRNIIKVPMTKYSTFPHRADGDYGAAKVMLRPASPGTGVIAGGSVRIVLEMAGVDNALGKQLGSNNALNNARATIVAVQKMKQFREVAEERGIPMEELWK 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01936 302 Pfam Ribosomal protein S5, C-terminal domain 223 293 IPR005324 GO:0003735|GO:0005840|GO:0006412
Pumo6g01936 302 NCBIfam 30S ribosomal protein S5 145 299 IPR005712 GO:0003735|GO:0006412|GO:0015935
Pumo6g01936 302 SUPERFAMILY dsRNA-binding domain-like 142 211 - -
Pumo6g01936 302 ProSitePatterns Ribosomal protein S5 signature. 163 195 IPR018192 -
Pumo6g01936 302 Gene3D - 212 301 IPR014721 -
Pumo6g01936 302 FunFam 30S ribosomal protein S5 135 207 - -
Pumo6g01936 302 SUPERFAMILY Ribosomal protein S5 domain 2-like 216 294 IPR020568 -
Pumo6g01936 302 ProSiteProfiles S5 double stranded RNA-binding domain profile. 146 209 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pumo6g01936 302 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN S5 135 297 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pumo6g01936 302 Hamap 30S ribosomal protein S5 [rpsE]. 123 299 IPR005712 GO:0003735|GO:0006412|GO:0015935
Pumo6g01936 302 Gene3D - 132 207 - -
Pumo6g01936 302 FunFam 30S ribosomal protein S5 211 302 - -
Pumo6g01936 302 Pfam Ribosomal protein S5, N-terminal domain 146 210 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01936 Pumo-Chr6 31064044 31066358 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01936 146 286 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 32.215 3.83e-17 78.2