Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01928 ATGGATGGAGATAGCAGCAATTCTTGGATTAGGAGGACCAAATTTTCCCACACAGTGTGTCACAGGTTGAATTATTCCAGTTCTGGAATAGGGTCTTTCAGCATTCAGCCAAGGGCACAAACACAACACAGTTCTTGTTCTAGTCTGAAATCAAGGCCAGAAGTGACTTTTGTTTCCAAGGCTTCTTCACAGAAAAAACCCATAATGAACAAGCAGAGATCTTTGTCCCCTTTGCCTCAAACCTCTCTCTCTGAGACCTTCAAGGAAGCCAGACATGAGCAGAAGAGGTTCTCAACACCTGGTCCAAGGAGGAAAGAGCAGCAGGACAAGAGAATCATGGGGAAGCTGCTCAAAAAGGATTCTCATGTTTCCAATTCTAAATCCCCTTACAGCAGTCCAATTAGGCACCTTGCTTCGATGAAATTGAGCGACAAGTCGTCGAAGCATCGCAAGGATTCAGGATGGGCAAAGTATTTTGACCATGGAGGAGGAAAGGTTACTGCTGTGGAAACAGCTGAGGAATGGAATGTTGACCTCTCCAAGCTCTTTGTTGGTGTTAGGTTTGCCCATGGTGCTCACAGCAGGCTTTACCATGGCATGTATAAGGATGAAGCTGTAGCTGTAAAAATTATCAGGGTACCGGATGATGACGAAAATGGAATGTTGGCTGATCGATTAGAGAAACAATTCATTAGAGAAGTCTCGCTTTTATCTCGTCTCCACCATCAAAATGTTATAAAGTTCGTAGCAGCATGCAGAAAACCTCCTGTTTATTGTGTTATCACAGAATATCTATCAGAAGGTTCCTTGAGGTCATATTTGCATAAGTTGGAGAGAAAAACTATTCCTCTAGAGAAGCTAATTGCTTTTGCTCTGGACATTGCTCATGGAATGGAATATATACACTCTCAAGGTGTCATTCACCGAGACCTTAAACCGGAGAATGTCCTTATTAATCAAGACTTTCACCTTAAAATTGCTGATTTTGGCATTGCTTGTGAGGAAGCATACTGTGACTTGTTTGCTGATGACCCCGGTACCTACCGCTGGATGGCACCTGAGATGATCAAACGAAAATCCTATGGGAGAAAGGTTGATGTATATAGTTTTGGGCTTATCTTATGGGAAATGGTGACTGGAACTATACCATATGAGGATATGACTCCCATCCAGGCTGCTTTTGCAGTAGTAAATAAGAATTCAAGGCCAGTTATTCCTTCAGACTGTCCACCTGCAATGCGAGCTTTAATCGAGCAATGTTGGTCGTTGCATCCGGACAAGAGGCCCGAGTTCTGGCAGGTTGTTAAGGTGTTAGAACAATTTGAATCTTCGCTTGCTCGTGATGGAACTCTGGCTCTGGTGCAAAACCCTTGTTGCCAAGATCATAAGAAAGGACTTCTTCATTGGATTCAAAAGCTTGGTCCTGTGCATCAAAATAATGGCCCTGTGCCTAAACCCAAATTTACATGA 1470 0.432 MDGDSSNSWIRRTKFSHTVCHRLNYSSSGIGSFSIQPRAQTQHSSCSSLKSRPEVTFVSKASSQKKPIMNKQRSLSPLPQTSLSETFKEARHEQKRFSTPGPRRKEQQDKRIMGKLLKKDSHVSNSKSPYSSPIRHLASMKLSDKSSKHRKDSGWAKYFDHGGGKVTAVETAEEWNVDLSKLFVGVRFAHGAHSRLYHGMYKDEAVAVKIIRVPDDDENGMLADRLEKQFIREVSLLSRLHHQNVIKFVAACRKPPVYCVITEYLSEGSLRSYLHKLERKTIPLEKLIAFALDIAHGMEYIHSQGVIHRDLKPENVLINQDFHLKIADFGIACEEAYCDLFADDPGTYRWMAPEMIKRKSYGRKVDVYSFGLILWEMVTGTIPYEDMTPIQAAFAVVNKNSRPVIPSDCPPAMRALIEQCWSLHPDKRPEFWQVVKVLEQFESSLARDGTLALVQNPCCQDHKKGLLHWIQKLGPVHQNNGPVPKPKFT 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01928 489 Pfam Protein tyrosine and serine/threonine kinase 188 438 IPR001245 GO:0004672|GO:0006468
Pumo6g01928 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 306 318 IPR008271 GO:0004672|GO:0006468
Pumo6g01928 489 MobiDBLite consensus disorder prediction 43 150 - -
Pumo6g01928 489 ProSiteProfiles Protein kinase domain profile. 182 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01928 489 MobiDBLite consensus disorder prediction 43 85 - -
Pumo6g01928 489 FunFam serine/threonine-protein kinase HT1 267 460 - -
Pumo6g01928 489 MobiDBLite consensus disorder prediction 86 122 - -
Pumo6g01928 489 Gene3D Transferase(Phosphotransferase) domain 1 267 464 - -
Pumo6g01928 489 CDD STKc_MAP3K-like 189 438 - -
Pumo6g01928 489 Gene3D Phosphorylase Kinase; domain 1 170 266 - -
Pumo6g01928 489 SMART serkin_6 182 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01928 489 PRINTS Tyrosine kinase catalytic domain signature 409 431 IPR001245 GO:0004672|GO:0006468
Pumo6g01928 489 PRINTS Tyrosine kinase catalytic domain signature 262 275 IPR001245 GO:0004672|GO:0006468
Pumo6g01928 489 PRINTS Tyrosine kinase catalytic domain signature 365 387 IPR001245 GO:0004672|GO:0006468
Pumo6g01928 489 PRINTS Tyrosine kinase catalytic domain signature 300 318 IPR001245 GO:0004672|GO:0006468
Pumo6g01928 489 PRINTS Tyrosine kinase catalytic domain signature 346 356 IPR001245 GO:0004672|GO:0006468
Pumo6g01928 489 FunFam Serine/threonine-protein kinase isoform 1 172 266 - -
Pumo6g01928 489 SUPERFAMILY Protein kinase-like (PK-like) 169 438 IPR011009 -
Pumo6g01928 489 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 66 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01928 Pumo-Chr6 30844178 30848561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01928 4 489 MAP Kinase Kinase Kinase AT5G58950 57.795 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Pumo6g01928 PK_Tyr_Ser-Thr 6.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01928 - - gmx:100784454 923.309