Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01917 ATGAAGGCCCACCTCCGGGATGGCAACCTCTCCCCACTCAGCCACCGCCACCGCCACGTCCATCCGGTTGGGCTCAAATGGTTTGTGGTTCTTGTCAGGCGCCTGCTTTCATATCCACGAGGTGCCAAACATGTCAAATGTTCATGCTGTCAGACTGTCAACATTGTATTAGAAGCTGATCAGGTTGGGCAAGTTAAGTGTGGCAGTTGTGCAGTATTGCTAATGTACCCATATGGTGCTTCACAAGTTAGATGTTCCTCATGCCGATTTGTGACAGAAATTGGGGCACACAACAAGCGGCCTCCTTGGTCTGTACAACAAAGGAAACCAACTCCTCCAAAAACTGGTTGTTAG 354 0.4972 MKAHLRDGNLSPLSHRHRHVHPVGLKWFVVLVRRLLSYPRGAKHVKCSCCQTVNIVLEADQVGQVKCGSCAVLLMYPYGASQVRCSSCRFVTEIGAHNKRPPWSVQQRKPTPPKTGC 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01917 117 Pfam LSD1 zinc finger 33 53 IPR005735 -
Pumo6g01917 117 Pfam LSD1 zinc finger 67 91 IPR005735 -
Pumo6g01917 117 PANTHER PROTEIN LSD1 33 113 IPR040319 -
Pumo6g01917 117 NCBIfam zinc finger domain, LSD1 subclass 33 56 IPR005735 -
Pumo6g01917 117 NCBIfam zinc finger domain, LSD1 subclass 64 92 IPR005735 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Pumo6g01917 zf-LSD1 6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01917 - - gmx:100780865 184.496