Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01911 ATGGACCCGATGATAGAAGCTGTCAACATTAGTTCTTCGTCATTCTTCAACCCGAAAGTTATAGAAGAAAGATTGGGTCCGTACAACTTTCGTGTGATAAGGGAACAAGTGGTGAAGCCCAAACCCAGAGATATATTGAGATTCCATGTGACGGTTACTGTTCGACAATTTGCAAATTATTTCTCACGTCTACGGATTATGAGAACTCCGACCTTATTAGAAACCTCAATACCCATAAACTTCGAAAGCTTGTTCGAAGATAATCAAGATTTTCTGCAAAGTTCCTTATTCTCCAACCCACAATGCTCTCGCTACTTCATACCAGAAATACTTGATCAAATATCACAGAAGATTCTTTCTCTAGTTCAACGACTTTTGGAGGTTCAGAGCCTCCCTTCTGATCCTGAATCTGCAGATTTGGAATGCCAAGAGTTCCCTTTGACTTTAGGCATTTTCGTGGACGTGATGCAAGAGGAAGAAGACAGCGAAGAGGATGAAGACATGATGGAAGATGAAGTGATTGAAGAGTCCATGCAGCAAGGTGTCACAATGACTCCTGCCTCCAATGAAGCCATACACTCTCTGAAAACATTCACAGATTCACTCATTCTCAAAACTGAAGAGTGTAATATTTGTATGGACAAGTTTCATGCTGAAGAGTGCGATGAAGATGCCAAGTTGTCTTCCTCGTCAATGCCATGCGGTCATGTGTTTCATCATCAATGTATTTTGAAGTGGCTGAAAACCAGTCACACCTGTCCCTTGTGTCGCTACCCTATGCCCACAGCTAAGGACTAA 798 0.4198 MDPMIEAVNISSSSFFNPKVIEERLGPYNFRVIREQVVKPKPRDILRFHVTVTVRQFANYFSRLRIMRTPTLLETSIPINFESLFEDNQDFLQSSLFSNPQCSRYFIPEILDQISQKILSLVQRLLEVQSLPSDPESADLECQEFPLTLGIFVDVMQEEEDSEEDEDMMEDEVIEESMQQGVTMTPASNEAIHSLKTFTDSLILKTEECNICMDKFHAEECDEDAKLSSSSMPCGHVFHHQCILKWLKTSHTCPLCRYPMPTAKD 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01911 265 SUPERFAMILY RING/U-box 208 262 - -
Pumo6g01911 265 SMART ringv_2 208 257 IPR011016 GO:0008270
Pumo6g01911 265 ProSiteProfiles Zinc finger RING-type profile. 209 257 IPR001841 -
Pumo6g01911 265 Pfam Ring finger domain 208 257 IPR001841 -
Pumo6g01911 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 263 IPR013083 -
Pumo6g01911 265 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 149 261 - -
Pumo6g01911 265 SMART ring_2 209 256 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01911 Pumo-Chr6 30604768 30605566 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01911 171 261 C3H Transcription Factor Family AT1G18760 30.851 1.94e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01911 - - gmx:102665306 343.199