Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01910 ATGGCCTTTGAGCACTACGTTTCTCAGGAATGGAAAGCCATCCAAAGCCCCGTGACAGTGACAGAAAATTTTGATGGGTGTTTTGATTGTAACATCTGCTTAGATTTTGCACATGAACCAGTTGTCACTCTTTGTGGCCACCTATACTGCTGGCCCTGCATCTACAAGTGGCTCCATGTCCAAAGTGCTTCTCTTGCACCTGATGAGCACCCCCAATGCCCTGTTTGCAAGGAAGATATATGCCACACTACAATGGTTCCTCTCTATGGCCGTGGCCAGGCCATAGCTCATTGTGACCGTGAAGGAAAAGCTTCATCCTATAGAGGCATTTTTATACCACCAAGACCACCTGCTTTGGGTGCTCAAACTCTCATGTCAACATCATCTCAAAGTGGTCAGCAACTTCCATATCGCAATCCTTATCAGAGCCAGCAAGAAGAGGATGAATCATCATCATCATCACAAATGCTGAATCCTGGTGCCATGGTGGCACCAGGGTTCCCCCACCTTGTGGTTGGGATGTTTGGAGAGATGTTTTATACCAGAGTCTTTGGCAACTCAGAAAATTTATACACCTACCCACAAAATTCTTATCACCTGGGGGGAAGTAATAATAGCCCCAGGTTGAGAAGGCAAGAGATGCAAGCAGACAAATCATTGAACAGAATCTCAATTTTTCTCTTTTGTTGCTTCTTTCTGTGTCTCATCGTCTTCTGA 717 0.4533 MAFEHYVSQEWKAIQSPVTVTENFDGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAPDEHPQCPVCKEDICHTTMVPLYGRGQAIAHCDREGKASSYRGIFIPPRPPALGAQTLMSTSSQSGQQLPYRNPYQSQQEEDESSSSSQMLNPGAMVAPGFPHLVVGMFGEMFYTRVFGNSENLYTYPQNSYHLGGSNNSPRLRRQEMQADKSLNRISIFLFCCFFLCLIVF 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01910 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 107 IPR013083 -
Pumo6g01910 238 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 132 - -
Pumo6g01910 238 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Pumo6g01910 238 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 235 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pumo6g01910 238 MobiDBLite consensus disorder prediction 122 158 - -
Pumo6g01910 238 SUPERFAMILY RING/U-box 22 95 - -
Pumo6g01910 238 SMART ring_2 30 76 IPR001841 -
Pumo6g01910 238 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Pumo6g01910 238 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01910 Pumo-Chr6 30544490 30545559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01910 9 224 C3H Transcription Factor Family AT4G27470 38.182 1.32e-47 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01910 K10666 - gmx:100779793 404.831