Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01909 ATGGCGAGTCGGTTTGGGTTATCGTCTTCGTCTTCGTCTTCGTCCAACATGAGAGTGACCAACACGCCCGCGAGCGACCTCGCCCTCACCAACCTCGCCTTCTGTTCCCCCTCCGATCTTCGCAGTTTCGCCGTCCCCGGCCACAACAACCTCTACCTCGCCGCCATCGCCGCCGATTCCTTCGTCTTATCTCTCTCTGCTCATGACAACATAGGCAGCGGCCAGATTGCGTTGAATGCCGTTCAACGCCGGTGTGCCAAGGTTTCTTCTGGTGATTCCGTACAAGTGAACCGATTTGTGCCACCTGAAGACTTCAACCTCGCGCTGCTAACCGTTGAATTGGAATTTGTTAAAAAGGGGAGTAAGAGTGAACAGATTGATGCCGTTCTACTGGCTAAGCAACTTCGGAAGAGATTTTTAAACCAGGTTATGACTGTGGGGCAGAAAGTGTTATTTGAGTATCATGGAAATAATTATAGCTTTACTGTTAGTAATGCTGCTGTTGAGGGCCAAGAAAAATCTAATTCTCCTGAAAGAGGGATGATTTCAGATGACACATACATTGTTTTTGAAACATCACGTGACAGTGGAATTAAGATTGTCAATCAACGTGAGGGTGCCACTAGCAACATTTTCAAGCAGAAAGAATTTAACCTTGAGTCGCTGGGTATTGGTGGCCTGAGTGCAGAATTTGCAGATATATTTCGAAGAGCTTTTGCTTCTCGTGTTTTCCCTCCTCATGTGACATCTAAATTGGGAATCAAGCATGTGAAGGGCATGCTTCTTTATGGGCCTCCTGGAACTGGAAAGACACTTATGGCACGTCAAATTGGAAAAATTTTGAATGGGAAGGAACCAAAGATTGTAAATGGCCCTGAAGTTTTGAGCAAATTTGTTGGTGAAACTGAAAAGAATGTGAGAGACCTTTTTGCTGATGCTGAACAGGATCAGAGGACCCGAGGGGATGAAAGTGATTTACATGTTATAATCTTTGATGAAATTGATGCTATTTGTAAGTCAAGAGGTTCAACTCGAGATGGTACTGGAGTTCATGATAGCATTGTAAATCAGCTTCTTACTAAGATAGATGGTGTGGAGTCACTAAATAATGTTTTGCTTATTGGAATGACTAACAGAAAGGACATGCTTGATGAAGCTCTCTTAAGACCAGGGAGGTTGGAAGTCCAGGTTGAGATAAGCCTTCCTGATGAAAATGGTCGATTGCAAATTCTTCAAATTCATACTAACAAAATGAAAGAGAATTCTTTTCTAGCTGCTGATGTGAACCTTCAAGAGCTTGCTGCTCGAACGAAAAACTACAGTGGTGCAGAACTTGAAGGTGTTGTGAAAAGTGCCGTCTCATATGCTTTAAATAGACAATTGAGTCTAGATGATCTCACTAAGCAGGTGGAGGAAGAGAACATTAAGGTTACAATGGATGACTTTTTGAATGCACTCCAAGAAGTTACTTCCGCATTTGGAGCTTCAACTGATGATCTTGAAAGATGCAGACTCCATGGCATGGTGGAGTGTGGTGATCGACATAAGCACATTTATCAAAGAGCAATGCTACTTGTGGAGCAAGTTAAAGTGAGTAAAGGAAGCCCACTTGTCAGTTGTCTCCTGGAAGGTTCTCGTGGCAGTGGTAAAACTGCACTTTCAGCTACTGTTGGTATTGACAGCGACTTCCCATATGTCAAGATAGTTTCAGCTGAATCAATGATTGGTCTACATGAGAGCACCAAATGTGCACAGATTATCAAGGTTTTTGAGGATGCATACAAGTCACCATTGAGTGTCATCATTCTTGATGACATTGAGAGATTATTGGAGTATGTGCCCATTGGTCCTCGATTTTCAAACTTGATTTCTCAGACACTACTGGTTCTGCTCAAACGGCTTCCTCCAAAGGGGAAAAAACTCATGATTATTGGCACAACAAGTGAACTAGATTTCTTGGAATCAATTGGATTTTGTGATACCTTCTCTGTTACTTACCATATTCCTACCTTGAACACAAAGGATGCAAAGAAGGTCCTAGAGCAGTTGAATGTGTTTTCTGATGAAGATATTGATTCTGCTGCAGAGGCATTGGATGATATGCCTATCAAAAAGCTATACATGTTGATTGAGATGGCAGCGCAAGGGGAGCAAGGTGGATCTGCAGAAGCCATCTTTTCTGGCAAAGAGAAGATTAATATCTCTCATTTCTTTGATTGCCTCAAGGATGTTGTTAGAATATAA 2244 0.4251 MASRFGLSSSSSSSSNMRVTNTPASDLALTNLAFCSPSDLRSFAVPGHNNLYLAAIAADSFVLSLSAHDNIGSGQIALNAVQRRCAKVSSGDSVQVNRFVPPEDFNLALLTVELEFVKKGSKSEQIDAVLLAKQLRKRFLNQVMTVGQKVLFEYHGNNYSFTVSNAAVEGQEKSNSPERGMISDDTYIVFETSRDSGIKIVNQREGATSNIFKQKEFNLESLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRTRGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAADVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLDDLTKQVEEENIKVTMDDFLNALQEVTSAFGASTDDLERCRLHGMVECGDRHKHIYQRAMLLVEQVKVSKGSPLVSCLLEGSRGSGKTALSATVGIDSDFPYVKIVSAESMIGLHESTKCAQIIKVFEDAYKSPLSVIILDDIERLLEYVPIGPRFSNLISQTLLVLLKRLPPKGKKLMIIGTTSELDFLESIGFCDTFSVTYHIPTLNTKDAKKVLEQLNVFSDEDIDSAAEALDDMPIKKLYMLIEMAAQGEQGGSAEAIFSGKEKINISHFFDCLKDVVRI 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01909 747 Gene3D - 402 489 - -
Pumo6g01909 747 Gene3D - 14 99 - -
Pumo6g01909 747 MobiDBLite consensus disorder prediction 1 20 - -
Pumo6g01909 747 Pfam AAA+ lid domain 427 482 IPR041569 -
Pumo6g01909 747 Pfam ATPase family associated with various cellular activities (AAA) 541 654 IPR003959 GO:0005524|GO:0016887
Pumo6g01909 747 Pfam ATPase family associated with various cellular activities (AAA) 260 400 IPR003959 GO:0005524|GO:0016887
Pumo6g01909 747 Gene3D - 210 401 IPR027417 -
Pumo6g01909 747 PANTHER VESICULAR-FUSION PROTEIN NSF 15 746 IPR039812 GO:0016887|GO:0035494
Pumo6g01909 747 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 498 IPR027417 -
Pumo6g01909 747 FunFam Vesicular-fusion ATPase SEC18 212 402 - -
Pumo6g01909 747 SUPERFAMILY Cdc48 domain 2-like 102 205 IPR029067 -
Pumo6g01909 747 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 501 711 IPR027417 -
Pumo6g01909 747 CDD AAA 530 656 - -
Pumo6g01909 747 SMART AAA_5 256 403 IPR003593 GO:0016887
Pumo6g01909 747 SMART AAA_5 536 674 IPR003593 GO:0016887
Pumo6g01909 747 SUPERFAMILY ADC-like 14 99 IPR009010 -
Pumo6g01909 747 CDD RecA-like_NSF-SEC18_r1-like 223 399 - -
Pumo6g01909 747 Pfam Cell division protein 48 (CDC48), domain 2 125 188 IPR004201 -
Pumo6g01909 747 Gene3D - 498 669 IPR027417 -
Pumo6g01909 747 FunFam Vesicle-fusing ATPase 103 200 - -
Pumo6g01909 747 FunFam vesicle-fusing ATPase isoform X1 498 669 - -
Pumo6g01909 747 FunFam Vesicle-fusing ATPase protein 14 99 - -
Pumo6g01909 747 FunFam Vesicle-fusing ATPase 402 489 - -
Pumo6g01909 747 ProSitePatterns AAA-protein family signature. 371 389 IPR003960 GO:0005524|GO:0016887
Pumo6g01909 747 Gene3D - 102 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01909 Pumo-Chr6 30517640 30533323 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01909 251 467 Calmodulin-binding Proteins AT3G56690 38.462 2.18e-40 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01909 K06027 - gmx:100779259 1384.01