Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01907 ATGGTTGATAATAATGTTTTAGAGCTCAACCTTGGTTTAGGCAACAACAACGTTGTTGGTCATGCAGGGCAATCACCGAGGCAAAGGTGCCCCGCACCGTTTCTGTTGAAGACTTACGATTTGTTGGAAGAATTAGGTGAGGGTGAAGATAGCACAAAAATTGTGTCATGGAATGCACAAGGAACTGCCTTTGTTGTGTGGTCTCCAGCTGAGTTCTCTGAGCTCACCTTGCCTAGATATTTCAAGCACAACAACTTCTCTAGCTTCATTCGCCAATTGAATACATATGGATTTAAGAAAATATCATCCAAAAGATGGGAATTCAAGCACGAGAAATTTCAGAGGGGTTGCAGGCACATGCTAGGTGAAATCACGAGGAAAAAGAGCGAGCCAAGTGTGTTTCCTGCATACCTTAAGTCTTCTTCAGAGGAAAATACTGCAATGAGTTCCATAGAAGAAAACAATCACCAACTGCTTATGGAGGAGAACAAGAACCTAAAGAAGGAGAAATTAGAGCTACAAATGCAGATAGATGAATACAAAGCACTTGAAATGAAGTTGTTGGCATGTCTCTCTCAGTTCATGGACACCCACCAAAATAAAGTTAGGAGACTATGTTAA 621 0.4122 MVDNNVLELNLGLGNNNVVGHAGQSPRQRCPAPFLLKTYDLLEELGEGEDSTKIVSWNAQGTAFVVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYGFKKISSKRWEFKHEKFQRGCRHMLGEITRKKSEPSVFPAYLKSSSEENTAMSSIEENNHQLLMEENKNLKKEKLELQMQIDEYKALEMKLLACLSQFMDTHQNKVRRLC 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01907 206 Coils Coil 149 186 - -
Pumo6g01907 206 PRINTS Heat shock factor (HSF) domain signature 89 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo6g01907 206 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo6g01907 206 PRINTS Heat shock factor (HSF) domain signature 38 61 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo6g01907 206 SMART hsfneu3 30 127 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo6g01907 206 FunFam Heat stress transcription factor A-6b 27 128 - -
Pumo6g01907 206 Pfam HSF-type DNA-binding 34 127 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo6g01907 206 SUPERFAMILY "Winged helix" DNA-binding domain 31 127 IPR036390 -
Pumo6g01907 206 Gene3D - 26 128 IPR036388 -
Pumo6g01907 206 ProSitePatterns HSF-type DNA-binding domain signature. 77 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo6g01907 206 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 25 185 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01907 Pumo-Chr6 30474707 30476978 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01907 22 198 HSF AT5G62020 34.615 1.34e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pumo6g01907 HSF_DNA-bind 6e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01907 K09419 - gmx:100789792 336.65