Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01892 ATGAGTTGTGGCTGCTTTGGAGCCTCAGCTCTCAAGCGGAAAAGGAATCCTTCTCATACTCCTAATGAGATTGATGGCTTTCCACTTGATAATGTTAAGCATTTCTCTGATAAAGACCTGAGACTGGCCACTGATAACTATAATCCAAGCAAAAAGCTAGGACGAGGAGGTTTTGGAATTGTTTACCAGGGAACCTTAAAAAATGGGAGACAGGTAGCAGTGAAGACGCTTTCAGCTGGGTCAAGGCAGGGAGTTCGTGAATTTTTAACTGAAATTAAAACTATATCAAATGTTAAGCATCCAAACCTCGTTGAATTGGTTGGCTCAAGAGGTTCAAATATCAGATTAGACTGGAGAAAAAGATCTGGCATTTGCATGGGTACCGCTAGAGGTCTTGTATTTCTTCACGAAGAACTTGTGCCACACATTGTGCACAGAGACATCAAGGCAAGCAACATACTACTTGACAGAGACTTCAATCCAAAAATAGGAGATTTTGGGTTGGCTAAATTATTTCCAGATGACATCACTCACATCAGCACAAGGATTGCTGGAACAACTGGTTACTTAGCACCAGAATATGCAATGGCTGGCCAGTTAACCATGAAGGCTGATGTATACAGTTTTGGGGTTCTCATACTTGAAATAATCAGTGGCAAAAGCAGTGCAAGGACAAACTGGGGAGGGTCCAACAAATTTCTCTTGGAATGGGCCTGGCAACTGTATGAAGAGGGGAAACTGTTGGAGCTTGTGGATCCAGACATGGTTGAATTCCCTGAGGAAGAGGTAATAAGGTACATGAAGATTGCTTTCTTCTGCACACAAGCAGCAGCAAGTAGAAGGCCAATGATGTCCCAGGTTGTTGATATGCTGTCCAAGAACATGAGGCTGAATGAAAAGCAACTAACAGCACCAGGGTTGTTCCAGGATTCAGGAGCTTCCTCTCAAAAGAAGTCATCCTTTGAATCCACAAGCTATCAATTTAGCTCTAACCCTTCCAGTATTACTCAGTTGGCCCCACGGTGA 1026 0.4318 MSCGCFGASALKRKRNPSHTPNEIDGFPLDNVKHFSDKDLRLATDNYNPSKKLGRGGFGIVYQGTLKNGRQVAVKTLSAGSRQGVREFLTEIKTISNVKHPNLVELVGSRGSNIRLDWRKRSGICMGTARGLVFLHEELVPHIVHRDIKASNILLDRDFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYAMAGQLTMKADVYSFGVLILEIISGKSSARTNWGGSNKFLLEWAWQLYEEGKLLELVDPDMVEFPEEEVIRYMKIAFFCTQAAASRRPMMSQVVDMLSKNMRLNEKQLTAPGLFQDSGASSQKKSSFESTSYQFSSNPSSITQLAPR 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01892 341 ProSiteProfiles Protein kinase domain profile. 47 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01892 341 Pfam Protein tyrosine and serine/threonine kinase 116 291 IPR001245 GO:0004672|GO:0006468
Pumo6g01892 341 Pfam Protein tyrosine and serine/threonine kinase 50 108 IPR001245 GO:0004672|GO:0006468
Pumo6g01892 341 PIRSF ILK 123 303 - -
Pumo6g01892 341 PIRSF ILK 9 117 - -
Pumo6g01892 341 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Pumo6g01892 341 SUPERFAMILY Protein kinase-like (PK-like) 31 326 IPR011009 -
Pumo6g01892 341 MobiDBLite consensus disorder prediction 306 341 - -
Pumo6g01892 341 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Pumo6g01892 341 Gene3D Transferase(Phosphotransferase) domain 1 106 309 - -
Pumo6g01892 341 FunFam Putative LRR receptor-like serine/threonine-protein kinase 100 303 - -
Pumo6g01892 341 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 114 324 - -
Pumo6g01892 341 Gene3D Phosphorylase Kinase; domain 1 25 105 - -
Pumo6g01892 341 SMART serkin_6 47 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01892 Pumo-Chr6 30070320 30074131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01892 10 340 Receptor kinase-like Gene Family AT1G56120 45.225 7.00e-93 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo6g01892 PK_Tyr_Ser-Thr 2.4e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01892 - - gmx:100775344 637.106