Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01876 ATGGCTTACCGACGTTGCCTCTTGATAAGAGGGAACCTCGTGGATCGGAGGTGCCATCCGTCTTTCAGTTATGTTCTCCATGGCGACGAGGGGAAACGCGAACGCGCTGAAGAAAAACCATCTTCAGCGGGAGTTAGTAATTTTACCCAAACAAGGTCCTTTGGAAGCTCTCTTGATGGACAAATGGGGTTCTTTGCTCCGTATCGAGATAGATTTCTTTCTCCTTGTGCCGGATACGGTTTCTGCCGGTATATGTCGACGGTGAATCAGGGTTCAGATGAGATTGGCAGTGACATAATGACTGATGTAGCTGATGTCCTCAGTGACACGACCATGGAGACTGTAGCTTCTCAGGCTCCCGTTGTTAATGAAGTTGCAATTGCTGCAGCTGATTCTTTTTATCCTGTACAGGCCTTGCAGTATGTGATAGATGCTGTGCATTCCTACACTGGCTTAAATTGGTGGGCATCCATAGTTCTAACAACCCTGTTGATTCGGAGCGCTACAGTTCCACTCTTAATAAATCAACTTAAGGCCACTTCTAAACTTACGTTAATGAGGCCTCACTTGGAAGAGATAAAGCAACAAATGGAGGGAATGACTATGGATCCTGTAGCTGTTGCTAAAGGTCAGCAGCAGATGAAGAAGCTGTTTAAGGAATATGGTGTGAGTCCTTTTACGCCATTGAAGGGACTCTTTATTCAAGGTCCTATTTTTGTTAGTTTTTTTCTTGCGATAACAAATATGGCTGAAAAAATGCCATCATTCAAGCATGGTGGAGCTTATTGGTTTATTGATCTCTCAACTCCAGATGCCTTGTACGTCTTTCCAGTTTTGACTGCATTGTCATTCTTAATAACAGTAGAGTGTAATATGCAAGAAGGGATGGAAGGAAATCCTGTGGCTGGCACCATGAAAAATGTCTCTAGGGGTCTTGCTGTTCTTACGGTTCCTTTCACCATGGGATTTCCAAAGGCAATATTCTGTTACTGGGTTACATCAAATTTGTTTTCACTTATGTATGGACTTGTGCTTAAAGTTCCTGGTGTAAAGAAAACTTTGGGTATTCCTGAAATACCTGTTGCACCACCCACCAGTCCTCCTCAATCTCCCTTTTCTATATTTCCAGCTCTAAAACAAGCTACATCAGCAACAAATGGGTTAAGCTCAATATCAGACGAAGCTTCAAAACATTCAAATAAAAAGATATCTTCTTCTTCTGTTATTAGTCAAAGGCTTAGAAGTTTAGAGAAACAAGTGAAAGGAAGAAAGAAAAACAAGAAGTGA 1287 0.4204 MAYRRCLLIRGNLVDRRCHPSFSYVLHGDEGKRERAEEKPSSAGVSNFTQTRSFGSSLDGQMGFFAPYRDRFLSPCAGYGFCRYMSTVNQGSDEIGSDIMTDVADVLSDTTMETVASQAPVVNEVAIAAADSFYPVQALQYVIDAVHSYTGLNWWASIVLTTLLIRSATVPLLINQLKATSKLTLMRPHLEEIKQQMEGMTMDPVAVAKGQQQMKKLFKEYGVSPFTPLKGLFIQGPIFVSFFLAITNMAEKMPSFKHGGAYWFIDLSTPDALYVFPVLTALSFLITVECNMQEGMEGNPVAGTMKNVSRGLAVLTVPFTMGFPKAIFCYWVTSNLFSLMYGLVLKVPGVKKTLGIPEIPVAPPTSPPQSPFSIFPALKQATSATNGLSSISDEASKHSNKKISSSSVISQRLRSLEKQVKGRKKNKK 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01876 428 CDD 5TM_Oxa1-like 151 348 - -
Pumo6g01876 428 MobiDBLite consensus disorder prediction 388 428 - -
Pumo6g01876 428 MobiDBLite consensus disorder prediction 29 48 - -
Pumo6g01876 428 NCBIfam membrane protein insertase YidC 153 341 IPR028055 -
Pumo6g01876 428 Coils Coil 413 428 - -
Pumo6g01876 428 Pfam 60Kd inner membrane protein 154 343 IPR028055 -
Pumo6g01876 428 PANTHER OXA1 108 421 IPR001708 GO:0016020|GO:0032977
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01876 Pumo-Chr6 29420582 29430893 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01876 157 427 Chloroplast and Mitochondria Gene Families AT2G28800 23.488 1.22e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01876 K03217 - gmx:100792907 743.036