Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01862 ATGGACAGCACAGATTCATCATCAGGGTCTCAGCACCCACAGCTGCCTCCAGGGTTTCGGTTCCACCCGACCGATGAAGAACTGGTGGTTCACTACCTCAAGAGAAAAGCTGCTTCTGCACCCCTTCCCGTGGCCATCATCGCCGATGTTGATCTCTACAAGTTCGACCCTTGGGAGCTACCAAGTATGCAACTTTATCACACCCCATTTCATCTTTTCGACCATTTTTTCAAATTCAAGGTAAAGCAACAGTTTGGTGAGCAAGAGTGGTACTTTTTCAGCCCAAGGGATAGGAAATACCCAAATGGGGCTAGGCCCAATAGGGCTGCTACTTCTGGGTATTGGAAGGCTACTGGAACTGACAAGCCTATACTAACATCTGATGGGCACCACAAAGTTGGAGTTAAGAAAGCACTTGTTTTTTATGGTGGAAAGCCTCCAAAAGGGGTTAAAACCAATTGGATCATGCATGAGTATAGGCTTGCTGATGATTCCTTTAATTCAAGCTCAAAGCCTCCTCCTCTGGTTCCTCATAACAAGAAAAATTCATTGAGGCTGGACGATTGGGTCTTGTGCCGAATATACAAGAAAAGCAACAGTACCACCCTGCCAAGGCCACCCTTGATGGAGCATGATGAGGAGCTTTCAATGGACAACATGCTACCAACGATGTCAACGTTGTCAATGGCTAACAACAACACGCAAAACTCTAAACCTCCTTCGAGGAGCACGGGTTATGGTCCACTAGGACTTGAAAATGATGACAACTTCTTCAATGGAATCTTAGCCGTTGATCATCAAAGCATGCAAAATGGTTCAGATTCTCACCTATTCTCTCCAAACACAAAGGGTGAAAATAATAATAATAACAACAATGCTAGCAACTTCCCTATCAAACGTGCACTCACATCACAACAGCTTTGGAACGAGTCAGGGTCTCCGGGGTCTTCTTCTTCATGTAAGCGATTTCATGGTGATCTTAATAGTGGAAGCAGCAATGCTGAGGACAATAATGATTCCTTTATCTCCCTGCTGAGCCAGTTTCCTCAGAACGCAACTTTTCAGCCAAACGCGATTCATGGGTCCGTTGAGGATGGTGCACCGAGGCAACAATTTCAACTTCATGGGATAAATTGGAACTGA 1143 0.4523 MDSTDSSSGSQHPQLPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIADVDLYKFDPWELPSMQLYHTPFHLFDHFFKFKVKQQFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSDGHHKVGVKKALVFYGGKPPKGVKTNWIMHEYRLADDSFNSSSKPPPLVPHNKKNSLRLDDWVLCRIYKKSNSTTLPRPPLMEHDEELSMDNMLPTMSTLSMANNNTQNSKPPSRSTGYGPLGLENDDNFFNGILAVDHQSMQNGSDSHLFSPNTKGENNNNNNNASNFPIKRALTSQQLWNESGSPGSSSSCKRFHGDLNSGSSNAEDNNDSFISLLSQFPQNATFQPNAIHGSVEDGAPRQQFQLHGINWN 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01862 380 MobiDBLite consensus disorder prediction 227 250 - -
Pumo6g01862 380 MobiDBLite consensus disorder prediction 1 21 - -
Pumo6g01862 380 MobiDBLite consensus disorder prediction 308 335 - -
Pumo6g01862 380 MobiDBLite consensus disorder prediction 270 296 - -
Pumo6g01862 380 Gene3D NAC domain 24 202 IPR036093 GO:0003677|GO:0006355
Pumo6g01862 380 FunFam NAC domain-containing protein 72-like 24 202 - -
Pumo6g01862 380 Pfam No apical meristem (NAM) protein 16 161 IPR003441 GO:0003677|GO:0006355
Pumo6g01862 380 ProSiteProfiles NAC domain profile. 15 197 IPR003441 GO:0003677|GO:0006355
Pumo6g01862 380 PANTHER NAC TRANSCRIPTION FACTOR 56 15 231 - -
Pumo6g01862 380 MobiDBLite consensus disorder prediction 227 243 - -
Pumo6g01862 380 SUPERFAMILY NAC domain 10 197 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01862 Pumo-Chr6 28857440 28859273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01862 5 380 NAC Transcription Factor Family AT1G61110 48.958 2.36e-103 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo6g01862 NAM 1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01862 - - gmx:100797132 662.529