Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01857 ATGGAGGTCCTGGGTGCTCCTCTGTGGGATATGGAGCAACACAGGAGATTGGTCCAGTTTTTAGTGGACACTGATGGCCAAGGCCTCAAATTTAATAACTTCTCATGGAACAGAGAAGCCAACATGTTATTCTTGGAATCTCCTGTTGGAGTTGGCTTTTCATACTCAAATACAAGCAGTGACTATGACCAATTGGGAGATGACTTGACAGCTAATGATGCTTACTCTTTTCTTCACAATTGGTTCCTAAAGTTTCCATCATATAGAACAAGGACATTTTACATAGCAGGGGAGAGTTATGCAGGAAAGTATGTACCAGAGCTGGCTGAACTCATCCATGATAGGAACAAGGACCCCTCCCACTATATTGATCTCAAGGGCATTTTGTTGGGTAACCCTGAAACATCTGATGCTGAGGACTGGATGGGTCTGGTTGATTATGCTTGGAGCCATGCTGTGATATCTGATGAAACTCATAAAACAATAAAATCAAGTTGTGACTTTAAAAGCACTGATCCATGGCGCAATGAAGATTGTAGCCAAGCTGTGGATGAAGTTCTCAAACAATACAACGAAATTGATATCTACAGTCTCTACACCTCTGTCTGCTTTGCCAGCACAGCACGTTCAGACGATCAATCCATGCAAACTTCCATTAAGCGTTCATCTAAAATGATGCCTAGGATGTTGGGTGGCTATGATCCATGCCTTGATGACTATGCTAAAGCATTTTATAATAAACCAGATGTTCAGAAGGCTCTCCATGCCAGCGATGGTCACAATCTAAAGAAGTGGAGCATTTGCAACAACAAGATATTCAATGACTGGGGCGATTCAAAGCCATCTGTTATCCCAATTTACAAGAAGCTTATTTCAGCAGGACTTAGGATTTGGGTTTACAGTGGAGATACAGATGGTAGAGTACCAGTGCTGTCCACAAGGTACAGCTTAAGCTCTCTTGCGTTGCCTGTCACTAAATCATGGAGGCCTTGGTACCATGACAATGAGGTTAGCGGGTGGTTTGAAGAATATCAGGGGCTTACATTTGCAACGTTTCGTGGAGCTGGCCATGCAGTTCCCTGTTTTAAACCAAGCAACTCACTTGCGTTCTTCTCCTCCTTTCTCAATGGAGAATCACCACCTTCTACAAAATAA 1155 0.4294 MEVLGAPLWDMEQHRRLVQFLVDTDGQGLKFNNFSWNREANMLFLESPVGVGFSYSNTSSDYDQLGDDLTANDAYSFLHNWFLKFPSYRTRTFYIAGESYAGKYVPELAELIHDRNKDPSHYIDLKGILLGNPETSDAEDWMGLVDYAWSHAVISDETHKTIKSSCDFKSTDPWRNEDCSQAVDEVLKQYNEIDIYSLYTSVCFASTARSDDQSMQTSIKRSSKMMPRMLGGYDPCLDDYAKAFYNKPDVQKALHASDGHNLKKWSICNNKIFNDWGDSKPSVIPIYKKLISAGLRIWVYSGDTDGRVPVLSTRYSLSSLALPVTKSWRPWYHDNEVSGWFEEYQGLTFATFRGAGHAVPCFKPSNSLAFFSSFLNGESPPSTK 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01857 384 SUPERFAMILY alpha/beta-Hydrolases 20 378 IPR029058 -
Pumo6g01857 384 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 27 364 IPR001563 GO:0004185|GO:0006508
Pumo6g01857 384 FunFam Carboxypeptidase 283 377 - -
Pumo6g01857 384 ProSitePatterns Serine carboxypeptidases, serine active site. 95 102 IPR018202 GO:0004185
Pumo6g01857 384 Pfam Serine carboxypeptidase 20 377 IPR001563 GO:0004185|GO:0006508
Pumo6g01857 384 Gene3D alpha/beta hydrolase 12 205 IPR029058 -
Pumo6g01857 384 Gene3D - 236 272 - -
Pumo6g01857 384 Gene3D - 283 377 - -
Pumo6g01857 384 PRINTS Carboxypeptidase C serine protease (S10) family signature 347 360 IPR001563 GO:0004185|GO:0006508
Pumo6g01857 384 PRINTS Carboxypeptidase C serine protease (S10) family signature 81 106 IPR001563 GO:0004185|GO:0006508
Pumo6g01857 384 PRINTS Carboxypeptidase C serine protease (S10) family signature 45 55 IPR001563 GO:0004185|GO:0006508
Pumo6g01857 384 PRINTS Carboxypeptidase C serine protease (S10) family signature 32 44 IPR001563 GO:0004185|GO:0006508
Pumo6g01857 384 FunFam Carboxypeptidase 42 205 - -
Pumo6g01857 384 FunFam Carboxypeptidase 233 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01857 Pumo-Chr6 28655329 28659670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01857 241 378 Calmodulin-binding Proteins AT2G22960 35.252 1.23e-18 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01857 K16297 - gmx:100815993 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01857 6 28655329 28659670 Pumo2g00878 2 13462168 13466860 PCT