Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01855 ATGGCGGATGCTGACGTGGACTTTTCGGAACTGTTCTCTGGTAATGCCGACGATGACGACGACATGTTTTATATAGATATTCAGACCGTTCAGAAGGTTCTCGATGAAGACGATGATTGTTACTTTCAGGAGATTCAGTCACTAGCTGTTCTCCATTCTGCTCAGATGTGTCAGATTCTGGGGTCAGAGGTTCAGTTGGTGCATCTGATTCTGCAGCAAACTCTATGCTTGATTGTGAACGTGAAAACCAGGGGACCTCAATCTCAGGCTTGCTCTTCCCCAAATGCTTTTCCTGGTAATTTCAGTGACTCATTGTCTCCAGGTGAAAGTGATGAGGTTTTCTGCACAGAAAGGACCGGAGTTTCTAAACATGAGATACCTGCTTATAGTGTAGAAACAAGTTTCCCTGAGGCACAGTCAAACAATATATCAATTTGTGAAGATAATTTGAATCTGAGTATGTGGAATGGTGAAAATGAGAGCCAATTCAAGCATGTGGGAGAGGATGTTGAATCTGAACATGCTTCACTCAGTTCTATTGTTGACAATGATGATGTAAATATTGAACTTGAAGGTTATGTTGAAGACATCATTGCAGGAGTTTCTGGGCAACAGGAAAATGACTCATGTACATCTTTTGAAGCATCATTTATGGACGCTGATAGATCTTTGCATGTCGCAACTTCAACTGATTCTACTATAGGTCAAGGTTCCCATGTTTCCAGTGATTTCATTGACTACCATGTATCTTCGAATTGTTACCAGGGAACACATGATGGACCCTTTGTTGCTGACTCTTGTCTTGGTTTTGTGCCTAATGGTATTTATTCTCAATTGTGGCCAAATGAAGAAACGATGAATAACATTAAGGCTGAAAATGTGGACTTAAATGCTGATATTGCATGTATGAGTAATGGCATGCCCTCAAGCACTACTGGGTGGATGCCTTTTCAGGATAGTCAAATTATGTTAGCTGATAATGGTTATCCATCATTTCATTCTGGTAAAGTTATTTTTGATGACATGTCATCACTGTCTCTTTCAGCTTGTGCTTCATACATGTCATATGGAGACCATTACCAAAACAATTTTCACCGTGAGGATGCTGAGTTCAATGTAGGCCAAGAGGTGAAACAAACACTTGGTATTTTTTCTTCTGTAGGGTGTCAGGCTTACCAATGTTTTGAGAATGAGGATAATTATGCAGTTATATCTGGGATATCCAATCAGTATCAAGATAGCATTGGTGGAACTGCTAGTTTTCAAGGAAACGTGGACAACTTGAATTTAAAAGCTGCAGATATATCTTGGCCCCATGCCCAAGCACTAATTACCGGTGAGAAGCAGTTTGGTTGTGTTAAGAGAGAAGGAGGGATTCAACATAAACTTATTGATTCTCATCTTTCAAAAGGAAGAACTGAGAATTTCCATGTTGACGAAGACCCTGATGTTTGCATTATTGAAGACATCAGTCATCCTGCTCCGATGAGTCGATCTGCAGACATTGGGAATTCCCTTAATATATCTCAATCTTCTAGATATGTTGATTCCCAGTCTTGCATGGTTGGAAGTACAAGGATGAAGGCATGTGATGAGCGAAATATATTACGAGTTGCATTGCAGGATCTATCTCAGCCAAAGTCAGAAGTTAGTCCACCAGAAGGATTGTTGGCAGTTCCTCTATTAAGACATCAGAGAATTGCTTTATCATGGATGGTTCAAAAGGAAACATCAAGTTTATATTGCTCAGGAGGAATTCTTGCAGATGATCAGGGACTTGGAAAAACAGTATCAACTATTGCGTTAATATTAAAGGAAAGACCTCCATTACTTAATGGGTGCACCAATGCCCAAAAAAGTGAATTGGAAACTCTGAATCTGGATGTGGATGATGACGTGCTTCCTCAGAATGGTAGAGTAAAGGAAGAATCTAATATGTGTGAGGATAAGGAAAGTATATATCCAATCACGAGCATGAATTTGTTGAAGCAAGCAAAGGGAAGGCCGTCTGCTGGGACCCTTATTGTTTGCCCCACTAGTGTCCTGCGTCAATGGGCTGAGGAGTTGCGTAGCAAGGTAACTGGTCAGGCAAATCTTTCTGTGCTAGTATACCATGGAAGCAATCGGACAAAAGATCCTAATGAGGTGGCTAAGTATGATGTTGTCCTAACGACTTATTCCATTGTCAGCATGGAGGTCCCTAAGCAGCCTCCAGCTGACAAAGATGATGAGGAAAAGGAAATTTTTGAAGATCATGCTGTACCAAGTAGGAAAAGAAAAAGCCCTTCTAATTCTAGTAAAAGTGGTAAGAAGAAATTGGATGGCACAACTCTTGAGGCTGTTGCTCGGCCACTTGCAAAGGTGGCATGGTTTAGGGTTGTCTTGGATGAGGCCCAGAGTATAAAGAATCACAAAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGTGCTAAGCGAAGATGGTGTTTGTCAGGGACTCCTATCCAGAATGCAATTGATGATCTCTACAGTTACTTCAGATTTCTAAGATATGACCCTTATTCTGTCTATACGACATTTTGTTCTAGAATTAAGAACCCAATTAGCAGAAATCCAGTAAACGGGTATAGAAAGCTACAAGCTGTCTTGAAGACAATAATGTTACGCAGAACCAAAGCTACACTTCTTGACGGGGAACCTATTATTTCCTTGCCGCCTAAATATATAGAGCTGAAAAAAGTTGATTTTTCATTGGAGGAACGTGATTTCTATTCCAAACTAGAGGCTGATTCACGTGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTCAAGCAAAATTATGTCAACATTTTGCTGATGCTTCTGCGCCTTAGACAAGCTTGTGATCACCCTTTGCTTGTCAAGCGATACAATTCAAACTCTCTATGGAGATCTTCGGTTGAGATGGCAAAGAAGCTTCCTCAGGAAAAACAAATTTCTCTTCTGAAATGTTTAGAGGCTTCCTTGGCCCTCTGTAGCATTTGTAATGATCCTCCTGAAGATGCAGTTGTTTCAGTTTGTGGCCATGTTTTCTGTAACCAATGCATCTGTGAACATCTTACTGGTGATGACAATCAGTGCCTTGCTGCAAATTGCAAAAGTCGACTGAGCACATCTATGCAGGAAGAATTTGAGCCTTGGTCTCAAAGTCAGCCATATGATTCTTCAAAAATAAAGGCTGCACTTGAGGTTTTGAAGTCATTATGTAAGCCACAGTGCTATACATCAAAAAGTACTTCTGAGCATAATAGCACTTTCAGGAAAGATAATGACTGCCTTGGGAACCCCTCGAATGCTAACAATGGGAAATCCTTCAAAGATTTTCCTGAGAGCCAAAATTTGTCTGATGAGAATAGAAGCTCCAACGATTCAGTTACTGTTGTAGGGCAGAAAGCTATAGTGTTTTCTCAGTGGACGAGGATGCTAGATTTGCTTGAAGCGTGTCTCAAGAATTCTTCGATTAATTATAGAAGGCTTGATGGAACAATGTCAGTTGTTGCGAGAGATAAAGCTGTTAAAGATTTTAACACTCTTCCCGAGGTATCAGTTATAATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTCAACTTGGTGGTAGCTTGCCATGTTCTTATGCTAGATTTATGGTGGAATCCTACAACTGAAGATCAAGCAATAGATAGAGCACATCGAATTGGGCAGACTCGTCCTGTGACTGTTTTGCGGTTAACTGTGAGAGATACAGTTGAAGATCGTATTCTAGCTCTGCAGCAAAAGAAGAGAACGATGGTTGCATCTGCATTTGGGGAGGATGGAACTGGTGATCGTGAGAGTCGCCTCACTGTGGAAGATTTAAAATATTTGTTCATGATGTGA 3876 0.4084 MADADVDFSELFSGNADDDDDMFYIDIQTVQKVLDEDDDCYFQEIQSLAVLHSAQMCQILGSEVQLVHLILQQTLCLIVNVKTRGPQSQACSSPNAFPGNFSDSLSPGESDEVFCTERTGVSKHEIPAYSVETSFPEAQSNNISICEDNLNLSMWNGENESQFKHVGEDVESEHASLSSIVDNDDVNIELEGYVEDIIAGVSGQQENDSCTSFEASFMDADRSLHVATSTDSTIGQGSHVSSDFIDYHVSSNCYQGTHDGPFVADSCLGFVPNGIYSQLWPNEETMNNIKAENVDLNADIACMSNGMPSSTTGWMPFQDSQIMLADNGYPSFHSGKVIFDDMSSLSLSACASYMSYGDHYQNNFHREDAEFNVGQEVKQTLGIFSSVGCQAYQCFENEDNYAVISGISNQYQDSIGGTASFQGNVDNLNLKAADISWPHAQALITGEKQFGCVKREGGIQHKLIDSHLSKGRTENFHVDEDPDVCIIEDISHPAPMSRSADIGNSLNISQSSRYVDSQSCMVGSTRMKACDERNILRVALQDLSQPKSEVSPPEGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPLLNGCTNAQKSELETLNLDVDDDVLPQNGRVKEESNMCEDKESIYPITSMNLLKQAKGRPSAGTLIVCPTSVLRQWAEELRSKVTGQANLSVLVYHGSNRTKDPNEVAKYDVVLTTYSIVSMEVPKQPPADKDDEEKEIFEDHAVPSRKRKSPSNSSKSGKKKLDGTTLEAVARPLAKVAWFRVVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYSVYTTFCSRIKNPISRNPVNGYRKLQAVLKTIMLRRTKATLLDGEPIISLPPKYIELKKVDFSLEERDFYSKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWRSSVEMAKKLPQEKQISLLKCLEASLALCSICNDPPEDAVVSVCGHVFCNQCICEHLTGDDNQCLAANCKSRLSTSMQEEFEPWSQSQPYDSSKIKAALEVLKSLCKPQCYTSKSTSEHNSTFRKDNDCLGNPSNANNGKSFKDFPESQNLSDENRSSNDSVTVVGQKAIVFSQWTRMLDLLEACLKNSSINYRRLDGTMSVVARDKAVKDFNTLPEVSVIIMSLKAASLGLNLVVACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRTMVASAFGEDGTGDRESRLTVEDLKYLFMM 1291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01855 1291 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1127 1286 IPR001650 -
Pumo6g01855 1291 Pfam Helicase conserved C-terminal domain 1134 1233 IPR001650 -
Pumo6g01855 1291 Gene3D - 752 884 IPR038718 -
Pumo6g01855 1291 Gene3D - 652 741 IPR038718 -
Pumo6g01855 1291 MobiDBLite consensus disorder prediction 750 774 - -
Pumo6g01855 1291 CDD SF2_C_SNF 1136 1243 - -
Pumo6g01855 1291 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 765 895 - -
Pumo6g01855 1291 Gene3D - 529 621 IPR038718 -
Pumo6g01855 1291 Gene3D - 898 1291 IPR027417 -
Pumo6g01855 1291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 547 883 IPR027417 -
Pumo6g01855 1291 SMART ring_2 999 1037 IPR001841 -
Pumo6g01855 1291 ProSitePatterns Zinc finger RING-type signature. 1014 1023 IPR017907 -
Pumo6g01855 1291 MobiDBLite consensus disorder prediction 1082 1129 - -
Pumo6g01855 1291 MobiDBLite consensus disorder prediction 1096 1129 - -
Pumo6g01855 1291 Pfam SNF2-related domain 581 960 IPR000330 GO:0005524|GO:0140658
Pumo6g01855 1291 CDD DEXDc_SHPRH-like 561 883 - -
Pumo6g01855 1291 SMART ultradead3 557 860 IPR014001 -
Pumo6g01855 1291 SUPERFAMILY RING/U-box 996 1035 - -
Pumo6g01855 1291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 984 1051 IPR013083 -
Pumo6g01855 1291 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 631 845 IPR014001 -
Pumo6g01855 1291 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 513 1290 - -
Pumo6g01855 1291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 891 1290 IPR027417 -
Pumo6g01855 1291 ProSiteProfiles Zinc finger RING-type profile. 999 1034 IPR001841 -
Pumo6g01855 1291 SMART helicmild6 1150 1233 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01855 Pumo-Chr6 28613845 28622461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01855 459 1290 RAD5 or RAD16-like Gene Family AT1G61140 60.000 0.0 958
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo6g01855 SNF2_N 2.7e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01855 - - gmx:100802436 2175.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01855 6 28613845 28622461 Pumo2g00879 2 13488320 13497115 PCT