Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01813 ATGCGGAGTTTCACTTTCTTCGAACGAGTTTCTAGAGCTTTCCGTGACCATGGGTCCAACTTGAAGCTTGTACTCCTCTGCACCACCGTTAGTGGTGGAGGGGTTCTGGCTTACGGAGAAGCTGTTGCGGCATCTGAAGCAGCTTTGACGGAGAAGAAAAAGGTGGTGGTGCTTGGAACAGGTTGGGCTGGCACGAGTTTCTTGAAGAATCTGGACAACCCCAGATATGAGGTTCACGTGGTGTCCCCTCGCAATTATTTTGCATTCACTCCTTTGCTGCCCAGTGTTACCTGCGGCACCGTCGAAGCGCGCAGCATTGTCGAACCCGTCCGCAATATTTTCAGGAAGAAAACGATGGACGTTCAATTCAGTGAAGCAGAGTGTCTCAAGATTGATGCAGCAAACAGAAAGGTTTACTGTCGATCTAATATAAGTAATAATTTGAACGAGAAAGAAGAATTTGTGGTGGACTATGACTACCTAATCATAGCCGTGGGAGCAAATGTCAACACATTTAATACTCCCGGAGTGACGGAGAATTGCCATTTCTTGAAGGAAGTTGAAGATGCACAGAAGATTAGAAGAACCGTTATTGACTGCTTTGAGAGAGCAAGTTTGCCTAGTGTGAGTGAAGAAGAAAAGAAGAGAATTCTTCATTTTGCTATTGTTGGAGGTGGTCCAACTGGAGTGGAGTTTGCAGCCTCACTACATGACTTTGTCACTGAGGATTTGGTCAAGATATATCCTGGGATAAAAGATCTAGTTAAAATTACACTTCTGGAGGCTGGAGATCATATTTTGAGCATGTTTGACAAAAGAATCACTGCTTTTGCTGAAGAGAAGTTCGGAAGAGATGGTATTGATGTGAAAACCGGATCCATGGTTGTGAAGGTATCTGAGAAAGAAATTTCTACTAAAGAAATGAAAAATGGAGGAGCAATTACTACAATTCCATATGGAATGGCTGTCTGGTCAACTGGTATTGGCACTCGTCCATTTATAAGAGATTTTATGTCACAAATTGGTCAGACTAACAGACGTGCCATAGCTACTGATGAATGGTTGAGAGTTGAAGCAACTAACAACGTGTATGCACTTGGTGACTGTGCTACAATAAACCAGCGAAAAGTCATGGAAGATATTGCGGCAATATTTAAGAAGGCTGACAAAGACAATTCAGGAACTCTTACTGTCAAAGAATTTCAGGAGGTATTGGATGACATCTGTGAGAGATACCCTCAGGTGGAGCTATATCTAAAGAGTCAACAGATGAACGACATTGCTGATTTGTTGAAAGGGTCCAAGGGAGATGTTGAAAACGTATCTATTGAACTGAATATCGAAGAACTCAAAACCGCACTCTCTAAAGTGGATTCTCAGATGAAATTTCTTCCCGCTACAGCGCAGGTTGCATCTCAGCAAGGCACCTACCTGGCTAAGTGCTTTAACCGGATGGAAGAGTGTGAGAAAAATCCAGAGGGTCCTATCAGGTTCAGGGGAGAAGGGCGCCATCGCTTCAAACCCTTTAGGTACAAGCATTTAGGGCAATTCGCTCCTCTAGGAGGAGAGCAAACAGCTGCACAGCTTCCTGGGGATTGGGTTTCAATTGGACACAGCTCTCAATGGCTGTGGTATTCTGTCTATGCAAGCAAGCAAGTCAGCTGGCGCACAAGGGCGTTAGTAGTATCAGACTGGACAAGACGCTTTATTTTTGGGAGGGATTCAAGTCAAATCTGA 1737 0.4404 MRSFTFFERVSRAFRDHGSNLKLVLLCTTVSGGGVLAYGEAVAASEAALTEKKKVVVLGTGWAGTSFLKNLDNPRYEVHVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIFRKKTMDVQFSEAECLKIDAANRKVYCRSNISNNLNEKEEFVVDYDYLIIAVGANVNTFNTPGVTENCHFLKEVEDAQKIRRTVIDCFERASLPSVSEEEKKRILHFAIVGGGPTGVEFAASLHDFVTEDLVKIYPGIKDLVKITLLEAGDHILSMFDKRITAFAEEKFGRDGIDVKTGSMVVKVSEKEISTKEMKNGGAITTIPYGMAVWSTGIGTRPFIRDFMSQIGQTNRRAIATDEWLRVEATNNVYALGDCATINQRKVMEDIAAIFKKADKDNSGTLTVKEFQEVLDDICERYPQVELYLKSQQMNDIADLLKGSKGDVENVSIELNIEELKTALSKVDSQMKFLPATAQVASQQGTYLAKCFNRMEECEKNPEGPIRFRGEGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVSDWTRRFIFGRDSSQI 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01813 578 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
Pumo6g01813 578 PANTHER NADH DEHYDROGENASE 46 578 IPR045024 GO:0003954|GO:0006116
Pumo6g01813 578 SUPERFAMILY EF-hand 331 465 IPR011992 -
Pumo6g01813 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 28 47 - -
Pumo6g01813 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 158 176 - -
Pumo6g01813 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 219 237 - -
Pumo6g01813 578 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 422 577 - -
Pumo6g01813 578 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 43 405 - -
Pumo6g01813 578 SMART efh_1 380 408 IPR002048 GO:0005509
Pumo6g01813 578 Gene3D - 419 577 - -
Pumo6g01813 578 Gene3D - 43 416 - -
Pumo6g01813 578 Pfam Pyridine nucleotide-disulphide oxidoreductase 53 378 IPR023753 GO:0016491
Pumo6g01813 578 SUPERFAMILY FAD/NAD(P)-binding domain 52 271 IPR036188 -
Pumo6g01813 578 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509
Pumo6g01813 578 SUPERFAMILY FAD/NAD(P)-binding domain 214 373 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01813 Pumo-Chr6 28106756 28112257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01813 1 578 EF-hand Containing Proteins AT4G05020 70.305 0.0 875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01813 K03885 - gmx:100809915 1107.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01813 6 28106756 28112257 Pumo2g00914 2 13786234 13792321 PCT