Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01806 ATGGCGAAGGAGAAGGCCGCGGAGGAGCCTCTGCCGGACCACCTCCGGTGCGGGCGCACGGACGGGCGGCAATGGCGGTGCCGGCGGCGAGTGAAGGAGAATCTCAAGCTCTGCGAGATTCACTACCTCCAAGGTCGCCACCGCCAGTACAAGGAGAAGGTTCCGGAGTCGCTGAAGCTTCATCGGAACCGCAAACCGAACAACAACGAGGAAGAGAAAGAGGAACGACAAGAACCTAACAACAACAACAATAATAATAATGTTCTCGACGACAATGTCGAATCTAGGGCACGGAGAACCTCGAGAATCGTGAAGAAGAAGCGCAAGCTCGAGGAGGAGGAGGATTCCGAGGCGCTGGCGGTTCCGGCGAGGAAGAAGGCGCTGAAGCAGGGTGATATGCAGTTGGAGCTCTTGAGGATGGTGCTGAAGAGAGAGGCTGAGAAGAAGAAGAACAACAAGAGCAAGAAGAAGAACAATAACAAGAAGAAGAACAATAAGAAGAAGGAGAATAAGAAGAAGAAAAAGGAGGAGGAAGATGAATTGTGTTATACTGAAGGAGAGTTGAGAAGGGAATTGCCGAATGGTGTGATGGAAATCTCTCCGGCTTCGCCGACGCGTGATTACAACAATGTGGATTCGCATTGTGATGTGAAAGTGGGTGTTGATAGTAAAACTGTTACTCCGCGTTACTTTAGGTCCAAGAATGTTGATAGAGTCCCTGTGGGGAAGTTGCAGATTGTGCCGTATGGATCGAACTTGAAGAAGGGTAAGAGGAAGAAGTGTCATTGGTGCCAGAGAAGCGAGTCTTGGAACCTCATCCAGTGTTCGAGCTGTCAGAGGGAGTTTTTCTGCATGGATTGCGTCAAAGAGCGGTATTTTGACACTCAAAATGAAGTTAAGAAGGCATGTCCAGTTTGTCGTGGAACTTGCACTTGTAAGGATTGCTCAGCAAGTCAACATAAGGACAGTGAAAGTAAGGAATATTTGACTGGTAAGAGCAGAGTTGATAGAATATTGCATTTTCATTATTTGATCTGCATGCTCCTTCCAGTACTAAAGCAAATAAGTGAAGATCAGAATATTGAGCTAGAAACAGAAGCAAAAATTAAAGGGAAAAATATTTCTGATATTCAAATCAAGCAGGTTGAATTTGGTTGCAATGAGAAAAATTATTGCAATCACTGCAAAACACCCATTTTGGATCTTCACAGAAGCTGTCCTAGTTGTTCATATAGCCTATGCTCAAGTTGTTGTCAGGAATTAAATCAAGGAAAAGCTTCTGGAGAAATTAACTCATCTACGTTCAAGCGACCTGATAAAATGAAAACTTGCGGTGCTAGTGAGAGCCATACGTTGGATGAGGAGAAAGCCATATCTAGTGGCAATTTAACTGATACTTCAATATTGCCTGAGTGGACAAATGGTAATGGCATTGATAGTCTATCATGCCCTCCTACAGAACTTGGTGGTTGTGGTAAAAGCCACCTTGAGTTGAGATCTGTTTTCCCCTCCAGTTGGATCAAAGAGATGGAAGTAAAGGCAGAAGAAATTGTTTGCAGCTATGACTTTCCTGAAACTTCAGATAAAAGTTCGAGCTGCTCATTGTGTTTTGACACCGATCTCAGTACTAACAGATACAAGCAGTTGCAAGAAGCAGCTCTAAGAGAAGATTCCAATGATAATTACTTGTTTTGCCCCACAGTGTTGGACATCAGTGGTGATAACTTTGAGCACTTTCAGAAACACTGGGGAAAAGGCCATCCTATAGTTGTCCGAGATGCGCTCCAAAGTACATCAAACCTCATTTGGGATCCACTGACCATGTTCTGTACTTATCTTGAGCAGAGCATTACAAGATATGAGAATAATAAAGACTTACTTGAATCTTGTTTGGATTGGTGGGAGGTGGAAATTAACATTAGGCAGTACTTTACTGGGTCTGTCAAACGTCGTCCTCAGAGAAACACTTGGCATGAGATGCTGAAACTAAAAGGGTGGCTTTCTTCCCAAATATTCAAAGAGCAGTTTCCAGCTCATTTTGCTGAGGTAATTGATGCTCTACCAGTTCAAGAATACATGCATCCCTTGTCCGGTCTTCTGAATTTAGCTGCAAATTTGCCACATGGGAGTGCAAAACATGACACTGGGCCATATGTCTACATTTCTTATGGCTCTGTTGACAAAGAAACTGATTCAGTGACAAAGCTCTGCTATGACTCATATGATGTGGTTAATATTATGACACATACGACAGATGGCCCCCTCTCTACAGAACAACTTACGAAAATAAGAAAATTACTGAAAAAACACAAAACTCTGTGTCAAATGGAGACTATTGCTGCTGAGGAGCCACAGGAACAGCGAGTGAATGGAATGGCATTATTGAAATGTGAAGAAACAGAGAAAAAAGGCTCGCAGAGTAAGGTTGAAGAAGGAATGAACTTTTTCAGGAGAGTCAATAGAACATCTTGCATCTCAACTGAAGCTAAAAAAGTTTCTAGTCAGAGCATGGACAGCAATATTTCTCAGAATGGGGAATGTGATTTCATTTCTGATTCTGATTCTGGATCCGCTTTGCTTCTCCTTGGGACTGTTCAAACTACTGAATTGTCAAAACACGATAATCCTAGAAATCCCTTTGAAAGCTCACAGAGACGTAAAAATAAGTTTACTGAGCATTTGGGTGCCCAGTGGGATGTCTTTCGTAGACAAGATGTACCAAAGCTCATAGAATACCTTAAGAGACACTCTGATGAATTTTCTTATACCCATGACTATCACAAGAAGATGGTTCATCCAATTCTAGATCAGAGCATTTTTCTTGACAGTACTCACAAAATGAGACTAAAAGAGGAATTTAAGATTGAACCATGGAGTTTTCAGCAACATGTTGGACAAGCTGTCATCATTCCTGCTGGATGTCCATACCAGATCAGGAATTCTAAGGTATGTATTAGCATAAAAATTCTCTCTTGCTGCCTTGCTGGCTTGAAAAGCAGAAACCTTGTCGAATCTTGTTTGTTATTGAACTGGATATCCATTCTTTTGGACTTATATTTTTTTAAATTCCTACTAATTTCAATATGTTATGTTAAGCCATACCTTTTAGCAAATGATTTCTCAAGAATGTATGAATGTATTTAG 3144 0.4189 MAKEKAAEEPLPDHLRCGRTDGRQWRCRRRVKENLKLCEIHYLQGRHRQYKEKVPESLKLHRNRKPNNNEEEKEERQEPNNNNNNNNVLDDNVESRARRTSRIVKKKRKLEEEEDSEALAVPARKKALKQGDMQLELLRMVLKREAEKKKNNKSKKKNNNKKKNNKKKENKKKKKEEEDELCYTEGELRRELPNGVMEISPASPTRDYNNVDSHCDVKVGVDSKTVTPRYFRSKNVDRVPVGKLQIVPYGSNLKKGKRKKCHWCQRSESWNLIQCSSCQREFFCMDCVKERYFDTQNEVKKACPVCRGTCTCKDCSASQHKDSESKEYLTGKSRVDRILHFHYLICMLLPVLKQISEDQNIELETEAKIKGKNISDIQIKQVEFGCNEKNYCNHCKTPILDLHRSCPSCSYSLCSSCCQELNQGKASGEINSSTFKRPDKMKTCGASESHTLDEEKAISSGNLTDTSILPEWTNGNGIDSLSCPPTELGGCGKSHLELRSVFPSSWIKEMEVKAEEIVCSYDFPETSDKSSSCSLCFDTDLSTNRYKQLQEAALREDSNDNYLFCPTVLDISGDNFEHFQKHWGKGHPIVVRDALQSTSNLIWDPLTMFCTYLEQSITRYENNKDLLESCLDWWEVEINIRQYFTGSVKRRPQRNTWHEMLKLKGWLSSQIFKEQFPAHFAEVIDALPVQEYMHPLSGLLNLAANLPHGSAKHDTGPYVYISYGSVDKETDSVTKLCYDSYDVVNIMTHTTDGPLSTEQLTKIRKLLKKHKTLCQMETIAAEEPQEQRVNGMALLKCEETEKKGSQSKVEEGMNFFRRVNRTSCISTEAKKVSSQSMDSNISQNGECDFISDSDSGSALLLLGTVQTTELSKHDNPRNPFESSQRRKNKFTEHLGAQWDVFRRQDVPKLIEYLKRHSDEFSYTHDYHKKMVHPILDQSIFLDSTHKMRLKEEFKIEPWSFQQHVGQAVIIPAGCPYQIRNSKVCISIKILSCCLAGLKSRNLVESCLLLNWISILLDLYFFKFLLISICYVKPYLLANDFSRMYECI 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01806 1047 SUPERFAMILY Clavaminate synthase-like 575 987 - -
Pumo6g01806 1047 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 13 987 IPR045109 GO:0032454|GO:0033169
Pumo6g01806 1047 Coils Coil 139 180 - -
Pumo6g01806 1047 ProSiteProfiles Zinc finger RING-type profile. 261 307 IPR001841 -
Pumo6g01806 1047 Pfam WRC 12 53 IPR014977 -
Pumo6g01806 1047 MobiDBLite consensus disorder prediction 106 120 - -
Pumo6g01806 1047 MobiDBLite consensus disorder prediction 149 170 - -
Pumo6g01806 1047 SMART cupin_9 676 1007 IPR003347 -
Pumo6g01806 1047 Gene3D Cupin 567 993 - -
Pumo6g01806 1047 MobiDBLite consensus disorder prediction 49 79 - -
Pumo6g01806 1047 ProSiteProfiles JmjC domain profile. 695 1025 IPR003347 -
Pumo6g01806 1047 MobiDBLite consensus disorder prediction 145 180 - -
Pumo6g01806 1047 MobiDBLite consensus disorder prediction 49 120 - -
Pumo6g01806 1047 ProSiteProfiles WRC domain profile. 11 57 IPR014977 -
Pumo6g01806 1047 FunFam Uncharacterized protein 564 807 - -
Pumo6g01806 1047 Pfam JmjC domain, hydroxylase 894 988 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01806 Pumo-Chr6 27922773 27928871 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01806 16 69 GRF Transcription Factor Family AT5G53660 44.444 9.33e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pumo6g01806 JmjC 1.4e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01806 K15601 - gmx:100810673 1704.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01806 6 27922773 27928871 Pumo2g00922 2 13863112 13869227 PCT