Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01803 ATGGGCATGACCACCATACGCAAACATGCAAATTTTCTGCTCCTTTTATTCTTTTTCTTCTCTTTTCATGCTTTGTTCTCTCATGCAGAGGATTCCATCGCAGGAGAGAAAGTAATCAGAGATGACGATGGTGGTGGCAATTTGGTGTCTAAAGACCAAAACTTTGAAATGGGTTTCTTCGGTTTTGATAACTCTTCGAGATACGTTGGGATTTGGTACCACGAGATTCCGGTTAAAGCGTTCATATGGGTTGCAAATAGAGAGAGACCCATCAGAGGAAGAGAAGGTTCGATCAGAATCAAAAGTGATGGCAACTTGGTTGTCCTCGATGGAGAGAACAACGAGGTGTGGTCAACAAACATGTCAATTCCAAGGAACAACACAAAAGCTGTTCTTCGTGACGATGGGAACCTTGTTCTTTCAGAACATGACAAAGATGTGTGGCAGAGCTTTGGGGACCCAACTGATACATTTGTGCCAGGTATGGCACTGCCAGCTAGTGGTGGAATGGGTATGTTCAGGTCGTGGAAATCGGCATCGGATCCTTCACCGGGAAACTACTCATTGGGGGTTAATTCTGAGGGGTCAACAATACAGATTTTGTTATTGGATGGGGAGAAAAGGAGGTGGAGAAGTGGGTATTGGGATGGTAGAGTGTTCACCGGTGTGTCCAATATGACAGGAAGCTCTCTATTTGGATTTAAACTTAGTACAAATGAAAAAGGAGAGAGTTACTTTACATATACATGGAATGGCCCCGACAAGGTGAGGTTTCAGATAACTTGGGACGGGTTTGAGAAGCGGTTCATGTGGGATGAAGATGAGAAACAATGGATTGAGACACAGCATGAGCCTTTTAATCAGTGTGAGGAATATAATTTTTGTGGCAGTTTTGCAGTGTGTGATATGTCTAAGGGAGTTGTTTGTAGTTGCATGCAAGGGTTTGAACCAAGGCATTGGGATGAGTGGAATAGTGGGAATTGGTCAAGGGGGTGTGGGAGGAGGACTAAACTGAAGGCTGAGAGAGATAATAGTTCTGGAACTGAGGTTAGTGTTGGAGAAGATGGTTTCTTGAAGCAAAGGTGTACTAAGTTGCCGGATTTTGCACATTTGGAGAATATTAATGATGATGGGGAATGTGAGAGCTATTGTCTGCAGAATACTTCTTGTACTGCTTATTCATTTACTATTGGAATTGGGTGCATGATTTGGAATGGGGAGTTAGTTGATGTTCAACACACTGAAAATAATCTTGGAAATGTATTCAACATCCGTCTTGCTGATTCTGAGTTAGGCGATGGGGATAAAAAGACCAAAATTTGGATAATATTAGCTGTTGTGGGGGGGTCGATCTGCCTTGGAATCGTTGCATTGCTGGTATGGAGGTTTAAGAGAAAACCTAAAGTTTCCTCAGCTTCTGGTTACAACAACAACAACAATAGCGAGATTCCAGTCTTTGATCTAACGAGGAGTACAGACTTATCAGAAATTTCAGGATCAACTGAGTTAGGCTTGGAAGGGAATCAACTAAGTGGAGCAGAACTTCCATTGTTCAATTTTAGCTTCATTCTAGCAGCAACAAACAATTTCTCAGACGAAAATAAGCTTGGACAAGGGGGATTTGGTCCTGTCTACAAGGGGAAGCTTCCAGGGGGAGAGGAAATAGCTGTCAAGAGGCTTTCAAGAAAGTCTAGCCAAGGTTTAGAGGAGTTCAAGAATGAAATGATGCTAATAGCCAAACTACAACATAGAAATCTGGTTAGACTATTAGGATGTTGCGTTCAAGGGGAAGAAAAGATACTGGTGTATGAGTACTTGCCAAACAAAAGCTTGGACTGCTTTTTATTTGATCCAGTGAAGCAAACACAACTAGACTGGGCAAGACGCTTTGAAATAATTGAGGGCATTGCAAGAGGGCTACTTTATCTGCACCGGGATTCAAGACTTAGAATAATTCATCGTGATCTAAAAGCAAGCAACATTTTGTTGGATGAAAGCATGAATCCAAAAATTTCAGACTTTGGCTTGGCCAGGATATTTGGGGGAAACCAAAATGAAGCCAACACAAACAGAGTCGTTGGTACATATGGTTATATGTCTCCAGAATATGCAATGGAAGGTCTATTTTCAGTTAAATCTGATGTCTATAGTTTTGGCGTATTGCTACTTGAGATTATAAGTGGCCGCAGGAACACTAGTTTTCGTAACACAGAAGAGTCAAGTCTCATAGGATATGTGAGTAACTCCTATTTACATTAG 2259 0.417 MGMTTIRKHANFLLLLFFFFSFHALFSHAEDSIAGEKVIRDDDGGGNLVSKDQNFEMGFFGFDNSSRYVGIWYHEIPVKAFIWVANRERPIRGREGSIRIKSDGNLVVLDGENNEVWSTNMSIPRNNTKAVLRDDGNLVLSEHDKDVWQSFGDPTDTFVPGMALPASGGMGMFRSWKSASDPSPGNYSLGVNSEGSTIQILLLDGEKRRWRSGYWDGRVFTGVSNMTGSSLFGFKLSTNEKGESYFTYTWNGPDKVRFQITWDGFEKRFMWDEDEKQWIETQHEPFNQCEEYNFCGSFAVCDMSKGVVCSCMQGFEPRHWDEWNSGNWSRGCGRRTKLKAERDNSSGTEVSVGEDGFLKQRCTKLPDFAHLENINDDGECESYCLQNTSCTAYSFTIGIGCMIWNGELVDVQHTENNLGNVFNIRLADSELGDGDKKTKIWIILAVVGGSICLGIVALLVWRFKRKPKVSSASGYNNNNNSEIPVFDLTRSTDLSEISGSTELGLEGNQLSGAELPLFNFSFILAATNNFSDENKLGQGGFGPVYKGKLPGGEEIAVKRLSRKSSQGLEEFKNEMMLIAKLQHRNLVRLLGCCVQGEEKILVYEYLPNKSLDCFLFDPVKQTQLDWARRFEIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDESMNPKISDFGLARIFGGNQNEANTNRVVGTYGYMSPEYAMEGLFSVKSDVYSFGVLLLEIISGRRNTSFRNTEESSLIGYVSNSYLH 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01803 752 SMART ntp_6 352 426 IPR003609 -
Pumo6g01803 752 SMART serkin_6 530 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01803 752 Gene3D - 26 152 IPR036426 -
Pumo6g01803 752 SMART blect_4 40 154 IPR001480 -
Pumo6g01803 752 Gene3D Phosphorylase Kinase; domain 1 500 605 - -
Pumo6g01803 752 Pfam PAN-like domain 353 411 IPR003609 -
Pumo6g01803 752 CDD B_lectin 44 154 IPR001480 -
Pumo6g01803 752 Pfam D-mannose binding lectin 81 168 IPR001480 -
Pumo6g01803 752 SUPERFAMILY alpha-D-mannose-specific plant lectins 67 215 IPR036426 -
Pumo6g01803 752 SUPERFAMILY Protein kinase-like (PK-like) 513 737 IPR011009 -
Pumo6g01803 752 ProSiteProfiles Bulb-type lectin domain profile. 30 153 IPR001480 -
Pumo6g01803 752 CDD PAN_AP_plant 354 427 - -
Pumo6g01803 752 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 495 605 - -
Pumo6g01803 752 ProSiteProfiles PAN/Apple domain profile. 352 427 IPR003609 -
Pumo6g01803 752 Pfam Protein tyrosine and serine/threonine kinase 533 746 IPR001245 GO:0004672|GO:0006468
Pumo6g01803 752 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 151 - -
Pumo6g01803 752 ProSiteProfiles Protein kinase domain profile. 530 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01803 752 ProSitePatterns Serine/Threonine protein kinases active-site signature. 651 663 IPR008271 GO:0004672|GO:0006468
Pumo6g01803 752 Gene3D Transferase(Phosphotransferase) domain 1 606 751 - -
Pumo6g01803 752 Pfam S-locus glycoprotein domain 210 318 IPR000858 GO:0048544
Pumo6g01803 752 FunFam Lectin-domain containing receptor kinase A4.3 606 752 - -
Pumo6g01803 752 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 733 - -
Pumo6g01803 752 PIRSF SRK 2 751 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01803 Pumo-Chr6 27873323 27877774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01803 518 740 Receptor kinase-like Gene Family AT4G11530 71.300 8.03e-107 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo6g01803 PK_Tyr_Ser-Thr 9.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01803 - - gmx:100786721 1272.69