Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01801 ATGAAGTTGCCGGATTTTGCACGTGTGGAGAGTATTTTTGATGATGGGGATTGTCAGAGCTATTGTCTGCAGAATAGTTCTTGTACTGCGTACTCATATACTATTGGAATTGGGTGCATGATTTGGTATGGGGAGTTAGTTGATGTTCAACACACTGAAAATAATCTTGGAAATGTATTCAACAACCGTCTTGCTGATTCCGAGTTAGGCGATGGGGATAAAAAGACCAAAATTTGGATAATATTAGCTGTTGTGGGGGGGTTGATCTGCCTTGGAATCGTTGCATTGCTGGTATGGAGGTTTAAGAGAAAACCTAAAGTTTCCTCAGCTTCTGGTTACAACAACAACAACAATAGCGAGATTCCAGTCTTTGATCTAACGAGGAGTACAGACTTATCAGAAATTTCAGGATCAACTGAGTTAGGCTTGGAAGGGAATCAACTAAGTGGAGCAGAACTTCCATTGTTCAATTTTAGCTTCATTCTAGCAGCAACAAACAATTTCTCAGACGAAAATAAGCTTGGACAAGGGGGATTTGGTCCTGTCTACAAGGGGAAGCTTCCAGGGGGACAGGAAATAGCTGTCAAGAGGCTTTCAAGAAAGTCTAGCCAAGGTTTAGAGGAGTTCAAGAATGAAATGATGCTAATAGCCAAACTACAACATAGAAATCTGGTTAGACTATTAGGATGTTGCGTTCAAGGGGAAGAAAAGATACTGGTGTATGAGTACTTGCCAAACAAAAGCTTGGACTGCTTTTTATTTGATCCAGTGAAGCAAACACAACTAGACTGGGCAAGACGCTTTGAAATAATTGAGGGCATTGCAAGAGGGCTACTTTATCTGCACCGGGATTCAAGACTTAGAATAATTCATCATGATCTAAAAGCAAGCAACATTTTGTTGGATGAAAGCATGAATCCAAAAATTTCAGACTTTGGCTTGGCCAGGATATTTGGGGGAAACCAAAATGAAGCCAACACAAACAGAGTCGTTGGTACATATGGTTATATGTCCGTAGAATATGCAATGGAAGGGTCTATTTTCAGCTAA 1050 0.4038 MKLPDFARVESIFDDGDCQSYCLQNSSCTAYSYTIGIGCMIWYGELVDVQHTENNLGNVFNNRLADSELGDGDKKTKIWIILAVVGGLICLGIVALLVWRFKRKPKVSSASGYNNNNNSEIPVFDLTRSTDLSEISGSTELGLEGNQLSGAELPLFNFSFILAATNNFSDENKLGQGGFGPVYKGKLPGGQEIAVKRLSRKSSQGLEEFKNEMMLIAKLQHRNLVRLLGCCVQGEEKILVYEYLPNKSLDCFLFDPVKQTQLDWARRFEIIEGIARGLLYLHRDSRLRIIHHDLKASNILLDESMNPKISDFGLARIFGGNQNEANTNRVVGTYGYMSVEYAMEGSIFS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01801 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 289 301 IPR008271 GO:0004672|GO:0006468
Pumo6g01801 349 Pfam Protein kinase domain 169 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01801 349 Gene3D Transferase(Phosphotransferase) domain 1 244 349 - -
Pumo6g01801 349 CDD PAN_AP_plant 1 65 - -
Pumo6g01801 349 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 132 243 - -
Pumo6g01801 349 ProSiteProfiles Protein kinase domain profile. 168 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01801 349 SMART serkin_6 168 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01801 349 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 15 346 - -
Pumo6g01801 349 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 244 335 - -
Pumo6g01801 349 ProSiteProfiles PAN/Apple domain profile. 1 65 IPR003609 -
Pumo6g01801 349 Gene3D Phosphorylase Kinase; domain 1 136 243 - -
Pumo6g01801 349 Pfam PAN-like domain 1 49 IPR003609 -
Pumo6g01801 349 SUPERFAMILY Protein kinase-like (PK-like) 151 345 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01801 Pumo-Chr6 27858493 27860372 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01801 67 345 Receptor kinase-like Gene Family AT4G05200 54.839 7.57e-93 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo6g01801 Pkinase 4.8e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01801 - - gmx:100786721 614.379