Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01795 ATGGCGACACATCTCCCCGACCACTTCAAGTGTCCAATTTCCCTAGAAATAATGTCCGACCCTGTCATCCTCTCCTCGGGTCACACCTTCGACCGTTCCTCAATCCAACGTTGGCTCGACGCAGGTCACCGAACATGTCCAATTACCAAACTAACCCTCCCGGAGCACCCTGCTCTCATCCCCAACCACGCGCTGCGAAGCTTAATCTCCAACTACACATTATTCCTCTCCCCACTCCACCAAACCGTTTCCCAACTCGAAACCCTAATTTCTACCCTCACCTCCAATTCTTCGTCCTCGGATTCCAAAATTGACTCGCTTAAGCACCTCACGCGCCTCTCCAAGCGCGATTCCGCGTTCCGCCGGAGGCTGGCGGAGTCCGGCGCCGTCCCCGCCGTGCTCGCCGCCGTGGACGACCCGAGCCTCCAGGAGAAGGCGCTCCCGCTCCTCCTCAACCTCACCCTCGACGACGACTCGAAGGTCGGCCTCGTCGCCGAGGGCGTGGTCGCGCGCGTGGTGGCCGTGCTCCTCCACGCGCCGCCGGACTGCCGCGCCGTCGCGGCGACGATCGTCACGAGCCTCGCGGTCGTCGAGGTCAACAAGGCCACCATCGGCGCGTTCCCGTCGGCAATCGCGGCGCTCGTGGCAATCCTCCGCGACGGCAAGGGGCGGGAGCGGAAGGAGGCCGCCACCGCGCTCTACGCGCTCTGTTCGTTTCCGGACAACCGGAGGAGGGCCGTCAGTTGCGGCGCGGTGCCGATTCTGCTCCGCAACGTCGAAATTGGACTCGAACGGTGCGTCGAGGTGATCGGCGTTTTGTCGAAGTGCAAAGAAGGGAGAGAACAAATGGAATCTTACCACGGTTGCGTTCAGATTCTGGCACGCGTTTTGAGGAACGGAAGCTCGAGGGGGATTCAGTATGCGCTGTTTGCACTCACTTCGGTTTGCTCTTGTAGCCAGCGAATGGCTCTGGTGGCTCTGGAAGAAGGGGTTCTAGAAGCTTCTCTTGGGTTTGTGGAAGATGATAATGAGAAAGTGAGGAGGAATGCGTCTACTTTGATTCGGGCTATGCGTGGCAACAACAGCAACCACAATTGGGTGAGGTGA 1107 0.598 MATHLPDHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLTLPEHPALIPNHALRSLISNYTLFLSPLHQTVSQLETLISTLTSNSSSSDSKIDSLKHLTRLSKRDSAFRRRLAESGAVPAVLAAVDDPSLQEKALPLLLNLTLDDDSKVGLVAEGVVARVVAVLLHAPPDCRAVAATIVTSLAVVEVNKATIGAFPSAIAALVAILRDGKGRERKEAATALYALCSFPDNRRRAVSCGAVPILLRNVEIGLERCVEVIGVLSKCKEGREQMESYHGCVQILARVLRNGSSRGIQYALFALTSVCSCSQRMALVALEEGVLEASLGFVEDDNEKVRRNASTLIRAMRGNNSNHNWVR 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01795 368 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Pumo6g01795 368 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Pumo6g01795 368 CDD RING-Ubox_PUB 6 53 IPR045210 -
Pumo6g01795 368 FunFam RING-type E3 ubiquitin transferase 4 75 - -
Pumo6g01795 368 Gene3D - 79 260 IPR011989 -
Pumo6g01795 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 74 IPR013083 -
Pumo6g01795 368 SUPERFAMILY ARM repeat 84 358 IPR016024 -
Pumo6g01795 368 SUPERFAMILY RING/U-box 4 73 - -
Pumo6g01795 368 Gene3D - 261 364 IPR011989 -
Pumo6g01795 368 FunFam RING-type E3 ubiquitin transferase 69 261 - -
Pumo6g01795 368 PANTHER U BOX DOMAIN-CONTAINING 6 357 - -
Pumo6g01795 368 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01795 Pumo-Chr6 27730917 27734811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01795 1 359 U-box Gene Family AT4G21350 59.621 8.15e-145 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01795 - - gmx:100785141 573.548