Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01793 ATGCTTCCAGCTGAGACACTTCACGACATAAGAGTAGGTACCTTTGCTTCATCACAATCACAATATCAAAGGCCAACCTTTCATGAAGAGAAACCCAATTGCCCAAGTACTCTACTAAACAAGCTCAATAGTGAAGAAACTCTAGAGTCGGCATCAATGGCTAAGAAAAATGTTTGTGAACCAGCATTGAAGAGGCCAAGAATTGAAACTCCATCTCCATTACCAACTTTTAAGGTTCGGAAAGAGAAGCTAGGGGACCGGGTCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACCGACACAGCATCCGTTCTTCACGAAGCCATTGAGTACATAAAGTTCCTTCACGATCAAGTCAATGTTTTGAGTACTTCATATATGAAAAATGGAGCTCCCATTCACCAGCAGCAGGGCTGTGATGATCTGAAAGACTCGGAAGGACCACAACAAGATTTAAAAAGCAAGGGGCTGTGTCTGGTACCGATTTCAAGCACATTTCCAGTGGCAACAGAAACCACTAGTGCTGAGTTGTGGACGCCTACATTCAGAGGCGCACTCTTAAGGTAG 573 0.4415 MLPAETLHDIRVGTFASSQSQYQRPTFHEEKPNCPSTLLNKLNSEETLESASMAKKNVCEPALKRPRIETPSPLPTFKVRKEKLGDRVTALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVNVLSTSYMKNGAPIHQQQGCDDLKDSEGPQQDLKSKGLCLVPISSTFPVATETTSAELWTPTFRGALLR 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01793 190 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 117 IPR011598 GO:0046983
Pumo6g01793 190 FunFam Transcription factor bHLH123 family 78 140 - -
Pumo6g01793 190 Gene3D - 78 142 IPR036638 GO:0046983
Pumo6g01793 190 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 134 IPR036638 GO:0046983
Pumo6g01793 190 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 33 169 - -
Pumo6g01793 190 CDD bHLH_AtbHLH_like 74 125 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01793 Pumo-Chr6 27676734 27678981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01793 49 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 66.667 4.94e-53 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01793 - - gmx:100813887 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01793 6 27676734 27678981 Pumo2g00946 2 14150851 14154081 PCT