Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01790 ATGGGACATGTATATGAAGAAAGGCTATGCATGCCTCTAGATGAGTCATGTTTTAATGCTGAAAAAGGTAGCAACAGGGAAAGGATGAGGAAGAAAAACTATGATTATGACACACAAGTGTTCAAATCCAAGAACCTTAAGGCGGAAAGGAGAAGGAGGGAGAAACTCAGTACCAGGCTTTTGATGAACAAAGCAACCATTGTTGAGGATGCCATCACCTACATTAAAAACCTGCAAGACAAAGTCCAGAGTCTCAGCCAAGAGCTTCATGAAATGGAAGCAACATCAGAGGAAATAAACCCAGAGAAAGATGAGTTTGATGCTGCAGAAGAGATGAAGAAATTGGGGATACAGGAAGAGGTCCAGGTGAATAAAATTGATGGGAATAAACTGTGGATCAAGATGATCATTGAGAAGAAGTGGGGAAGGTTCAAGAAATTGATGGAGGCCATGGATACTTTTGGCATTGAACTGATAGACACCAATGTTACAACCATAAAAGGAGCATATCTGATTACAAGCTTCATGCAGGTGACCCTAGGAAAGATAGGAATATAG 558 0.4068 MGHVYEERLCMPLDESCFNAEKGSNRERMRKKNYDYDTQVFKSKNLKAERRRREKLSTRLLMNKATIVEDAITYIKNLQDKVQSLSQELHEMEATSEEINPEKDEFDAAEEMKKLGIQEEVQVNKIDGNKLWIKMIIEKKWGRFKKLMEAMDTFGIELIDTNVTTIKGAYLITSFMQVTLGKIGI 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01790 185 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 42 95 IPR036638 GO:0046983
Pumo6g01790 185 Coils Coil 68 95 - -
Pumo6g01790 185 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 25 177 - -
Pumo6g01790 185 Gene3D - 31 99 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01790 Pumo-Chr6 27654747 27655576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01790 41 177 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 49.045 1.21e-39 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01790 - - vun:114186874 223.787