Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01781 ATGAACTGGCCTACCTTGACTTTCATAATAGGAATTTGCATAGGCTTTGTGGTTGGGGTATGTTTGGCATTATCAATTGTATTCTGCATCATATGTGGAAGGAAGCGCACAAAGATTGATAGGAGCAGTTCTCACAGTGCAGTGACCATTCCTGTTAATGTCCAAGGGGTTGATTCTAACTCAGCATTATCAGAGGGTCAGGAATCACCCAGAACATCTGAGTGGAGTAACACTCCTTTATGGTTGGAAACACTTAGGAGGAAGAGTGCAGTGTCAGCATGTGGAATTCCCAAGTATTCTTACAAAGATATACAAAAGGCTACTTCTAATTTCACAACCATCATAGGCAATGGAGCATTTGGTCCTGTTTATAAAGCACAGATGGATACAGGTGAGACAGTTGCAGTTAAAGTCCTTGGTACTAATTCAAGACAAGGAGAACAGGAATTTTTAACTGAGGTATTATTACTTGGGAGATTACATCACAAAAACCTTGTGGATTTGGTGGGATATGTGGCAGAAAGAGGAAAGCATATGCTTCTTTACATTTACATGAGCAATGGCAGTCTTGCTTCCCATTTGTATGCTGATTTGGGAAAAAATCATGAGCCATTGAGCTGGGATTTGAGGCTTAGCATAGCCCTAGATGTTGCAAGGGGACTGGAATATCTACATCATGGGGCTTCTCCACCTGTTGTGCACCGTGACATCAAATCTTGCAACATTCTGTTGGACCAGTCTATGATAGCCAAGGTCACTGACTTTGGGCTTTCCAGACCAGAGCTGATCAAACCTCGCACATCAAATGTCAGAGGAACTTTCGGATATGTTGATCCTGAGTATTTGTCTACAAGAACCTTCACTAAGAAAAGTGATGTTTATAGTTTTGGTGTGCTACTGTTTGAGCTTATCACTGGCAGGAATCCACAGCAAGGGCTCATGGAATATGTAAAACTAGCAGCCATGGAAGGTGAGGGTAAGGTTGGATGGGAAGAAATTGTAGACTCACAATTAAATGGAAAATATGATGTGCATAATCTTCATGACATGGCTTCAATTGCATTCAAATGTGTTAATGAAGTCTCCAAAAGCCGACTTTCGATGTGCGAAATTGTTCAAGAATTATCTCAGCTTTGTAAGAGACATAGTAAAAATCATGGTCAAACATCTCCTGCTGCATCAAAGGAAGTGTCCATTGAAGTGGACAAGCTTGATACTCGTGACTTTTCATCAATTGAGAGTTCACAGATGCTGCGCAGATTGCATAGCCGATGA 1275 0.4125 MNWPTLTFIIGICIGFVVGVCLALSIVFCIICGRKRTKIDRSSSHSAVTIPVNVQGVDSNSALSEGQESPRTSEWSNTPLWLETLRRKSAVSACGIPKYSYKDIQKATSNFTTIIGNGAFGPVYKAQMDTGETVAVKVLGTNSRQGEQEFLTEVLLLGRLHHKNLVDLVGYVAERGKHMLLYIYMSNGSLASHLYADLGKNHEPLSWDLRLSIALDVARGLEYLHHGASPPVVHRDIKSCNILLDQSMIAKVTDFGLSRPELIKPRTSNVRGTFGYVDPEYLSTRTFTKKSDVYSFGVLLFELITGRNPQQGLMEYVKLAAMEGEGKVGWEEIVDSQLNGKYDVHNLHDMASIAFKCVNEVSKSRLSMCEIVQELSQLCKRHSKNHGQTSPAASKEVSIEVDKLDTRDFSSIESSQMLRRLHSR 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01781 424 Gene3D Transferase(Phosphotransferase) domain 1 185 403 - -
Pumo6g01781 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Pumo6g01781 424 ProSiteProfiles Protein kinase domain profile. 109 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01781 424 Pfam Protein tyrosine and serine/threonine kinase 111 375 IPR001245 GO:0004672|GO:0006468
Pumo6g01781 424 FunFam calcium/calmodulin-regulated receptor-like kinase 1 185 396 - -
Pumo6g01781 424 CDD STKc_IRAK 115 378 - -
Pumo6g01781 424 Gene3D Phosphorylase Kinase; domain 1 80 184 - -
Pumo6g01781 424 SMART serkin_6 109 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01781 424 SUPERFAMILY Protein kinase-like (PK-like) 94 375 IPR011009 -
Pumo6g01781 424 PANTHER OS01G0750732 PROTEIN 12 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01781 Pumo-Chr6 27397230 27401955 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01781 3 423 Receptor kinase-like Gene Family AT1G30570 35.892 1.07e-71 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Pumo6g01781 PK_Tyr_Ser-Thr 6.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01781 - - gmx:100816549 765.377