Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01734 ATGGAGGACCCTACTTTTCTCCATCAGTGGCATTTGAGTTCTATTGATGACCCTAACTTACTGCCAATAGCTGCTGCTTTTGGAGACACTTTACAACATCATGCATTCACTTACCCAAACTTCAACCCCAAAACTTCCATGGAAACTGCACTTGCTGACATTGAAAGACCCACAAAACATCAAAGAAACAACATCAGCTTGAATCCCAATTACAAAAGTGCTCAGACATCATCAGAGACACAATTTGTTCCTTTCCCAAATCTTTTTTCATTTGTGGACTCCAATCACATAACCAATAGCACAACTTCTCCACACACTATCTCTCAAGGAACCTTGGGGAATCATAATAATAACTATGTCTTCAAGGCATGCCAAGAAGCCAAAAAGACTGGGAAACGTTATAAACATTCTCAACCTCAAGACCACATAATAGCTGAAAGGAAGCGGCGAGAGAAGCTCAGCCAGAGATTCATTGCTTTATCTGCCCTTGTTCCCGGACTACAGAAGACGGACAAAGCTTCTGTTCTTGAAGATGCTATCAAATACTTGAAGCAATTGCAAGAGAAAGTAAAGGCTCTTGAGGAGGAACGAAACATGAAGAAAGATGTGGAGTCTGTGGTAATTGTGAAGAAATCTCAACTATCCAATGATCTTAACAACTCTTCTTCAGAACATGATGGTTCATTTGACGAGGCACTGCCTGAAATTGAAGCAAGATTTTGCGAGAGAAGTGTCCTCATAAGAGTACACTGTGAAAAGAGCAAAGGAGTTGTAGAAAAAACAATTCAGGAAATTGAGAAACTCCATCTGAAAGTCATCAATAGCAATACCATGACATTTGGGAGATGTGCCCTTGATATAACAATAATTGCTCAGATCGATATGGAATTTTGCATGGGAGTGAAGGATCTTGTGAGAAACCTACGCTCAGCTTTTACATCTTTCATGTGA 951 0.4006 MEDPTFLHQWHLSSIDDPNLLPIAAAFGDTLQHHAFTYPNFNPKTSMETALADIERPTKHQRNNISLNPNYKSAQTSSETQFVPFPNLFSFVDSNHITNSTTSPHTISQGTLGNHNNNYVFKACQEAKKTGKRYKHSQPQDHIIAERKRREKLSQRFIALSALVPGLQKTDKASVLEDAIKYLKQLQEKVKALEEERNMKKDVESVVIVKKSQLSNDLNNSSSEHDGSFDEALPEIEARFCERSVLIRVHCEKSKGVVEKTIQEIEKLHLKVINSNTMTFGRCALDITIIAQIDMEFCMGVKDLVRNLRSAFTSFM 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01734 316 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 186 IPR011598 GO:0046983
Pumo6g01734 316 PANTHER BHLH TRANSCRIPTION FACTOR 27 314 - -
Pumo6g01734 316 Coils Coil 176 203 - -
Pumo6g01734 316 CDD bHLH_AtNAI1_like 140 212 - -
Pumo6g01734 316 Gene3D - 133 211 IPR036638 GO:0046983
Pumo6g01734 316 SMART finulus 143 192 IPR011598 GO:0046983
Pumo6g01734 316 Pfam Helix-loop-helix DNA-binding domain 140 187 IPR011598 GO:0046983
Pumo6g01734 316 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 200 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01734 Pumo-Chr6 26146383 26148029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01734 99 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 50.226 2.17e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo6g01734 HLH 4.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01734 - - gmx:100799262 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01734 6 26146383 26148029 Pumo6g01734 6 26146383 26148029 ECH
Pumo6g01734 6 26146383 26148029 Pumo2g00988 2 14975491 14978831 PCT