Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01731 ATGGCTTCCTCGGAGATCGAGGTGGTATCATCATCGGTCTCCAAACCCAACGACCAGCCTCCAATCCTCGACGTCTTCACCGCCTCTGCTCACGGCGACTTCAACAAATTGAGAACCTTCGTCGAACAAGACGGTGCCTCCGTCTCTGTTCCTGATTTTAACGGCTATTACGCTCTTCAATGGGCCTCGCTCAACAACTTCCACCACATTGCACACTATCTCATTCAGCATGGGGCGGATGTCAATGCTAAAGACAACATGCAACAAACGGCATTGCATTGGGCGGCGGTTCGTGGTTCAACTCTAGCTGCTGATGTTCTTGTGGAGAATGGTGCTCGGGTTGAAGCTGCAGACGTAAATGGATACCGGGCAGTTCATGTTGCTGCACAATATGGACAGACAGCTTTCTTAAATCACATTGTAGTAAAGTACCATGCTGATTTTGATGTGCCTGATAATGATGGAAGGAGTCCTCTTCATTGGGCTGCATATAAGGGATTTGCTGACACAATAAGATTGCTTCTATTTAGAGATGCAAGTCAAGGAAGACGAGATAAAGATGGTTGTACACCGTTGCACTGGGCTGCATTAAGAGGAAATGCAGAGGCATGCGCTGTGCTTGTACATGCAGGCACAAAGGAAGAACTGATGGTGAAGGACAATGCTGGGCACACACCTGTACAGCTTGCATATGATAAAGGTCATCGGCATGTCGCTCCTTTCCTTTCAAATCAACAACGGGCTCATAGCAACTACTGGAAAGGGAAACTGTGTAGTTGGATGGTGACAGATATTGGTTATGCTCCCATCTTATTGTGTACTATAATCTTTTGCATGATCCTCTTCATCAACTCAGTCGTTGCAGCTCCTAACCTTAAAAAGATTACTGCCGTTGTTGGACTTTGGGCATGGACGGCACTTTCTTCGGCAGTTGGTGCCCTGATTATGTTCTATAAGTGTAGTAGTAAAGATCCTGGTTATATAAAACGGCCAGGAGACTTGGGTACTCAAAGTGATACAGAGGATCCTTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAATTGGTCTCAACTTTGCCCTACCTGCAAGATAATAAGACCTGTCCGATCTAAGCATTGCCCAACTTGTAAGCGATGTGTGGAACAGTTCGACCACCATTGTCCATGGATATCTAACTGTGTTGGGAAGAGGAACAAAAGGGATTTCTTTATTTTTATCTGCCTGGGAACTTTGACTTCTTCCCTTTCTGGTGCCGTTGCAGTTCAAAGAATTTGGACATCTACACCGGCATTACTGCCAGGAGAAACATGGATCCATTATGTGTTAGTAAGACATCCAGGTTTAGTTGTGTTTTTGGTGATCGACGCTGTTGTTTTCATTGCGGCTACGACATTAACGATAACACAGGCTTCCATGATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTACGATTATCTTCGTGGTCCTGATGGGCGGTTCAGAAACCCATATAACCACGGTTATTGGAAGAATTGTGCTGACTTCCTTTTTCTGGGCTATACAAATGATGATGAAATTGCTTGGCCTCCATTACAGCAGAGCACAAAGAAATAA 1620 0.4481 MASSEIEVVSSSVSKPNDQPPILDVFTASAHGDFNKLRTFVEQDGASVSVPDFNGYYALQWASLNNFHHIAHYLIQHGADVNAKDNMQQTALHWAAVRGSTLAADVLVENGARVEAADVNGYRAVHVAAQYGQTAFLNHIVVKYHADFDVPDNDGRSPLHWAAYKGFADTIRLLLFRDASQGRRDKDGCTPLHWAALRGNAEACAVLVHAGTKEELMVKDNAGHTPVQLAYDKGHRHVAPFLSNQQRAHSNYWKGKLCSWMVTDIGYAPILLCTIIFCMILFINSVVAAPNLKKITAVVGLWAWTALSSAVGALIMFYKCSSKDPGYIKRPGDLGTQSDTEDPLLNIDLNSSSVWMGNWSQLCPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFICLGTLTSSLSGAVAVQRIWTSTPALLPGETWIHYVLVRHPGLVVFLVIDAVVFIAATTLTITQASMIARNVTTNELANSSRYDYLRGPDGRFRNPYNHGYWKNCADFLFLGYTNDDEIAWPPLQQSTKK 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01731 539 Pfam DHHC palmitoyltransferase 361 488 IPR001594 GO:0016409
Pumo6g01731 539 ProSiteProfiles Ankyrin repeat region circular profile. 54 86 - -
Pumo6g01731 539 ProSiteProfiles Ankyrin repeat profile. 87 119 IPR002110 GO:0005515
Pumo6g01731 539 ProSiteProfiles Ankyrin repeat profile. 154 186 IPR002110 GO:0005515
Pumo6g01731 539 FunFam S-acyltransferase 141 249 - -
Pumo6g01731 539 ProSiteProfiles Ankyrin repeat region circular profile. 87 118 - -
Pumo6g01731 539 Gene3D - 141 254 IPR036770 -
Pumo6g01731 539 ProSiteProfiles Ankyrin repeat profile. 187 219 IPR002110 GO:0005515
Pumo6g01731 539 Gene3D - 22 140 IPR036770 -
Pumo6g01731 539 Pfam Ankyrin repeats (3 copies) 29 117 IPR002110 GO:0005515
Pumo6g01731 539 Pfam Ankyrin repeats (3 copies) 118 183 IPR002110 GO:0005515
Pumo6g01731 539 Pfam Ankyrin repeats (3 copies) 185 244 IPR002110 GO:0005515
Pumo6g01731 539 ProSiteProfiles Ankyrin repeat region circular profile. 187 211 - -
Pumo6g01731 539 ProSiteProfiles Ankyrin repeat profile. 120 153 IPR002110 GO:0005515
Pumo6g01731 539 ProSiteProfiles DHHC domain profile. 361 411 - -
Pumo6g01731 539 SUPERFAMILY Ankyrin repeat 26 244 IPR036770 -
Pumo6g01731 539 ProSiteProfiles Ankyrin repeat region circular profile. 154 186 - -
Pumo6g01731 539 ProSiteProfiles Ankyrin repeat profile. 54 86 IPR002110 GO:0005515
Pumo6g01731 539 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 13 524 - -
Pumo6g01731 539 SMART ANK_2a 222 252 IPR002110 GO:0005515
Pumo6g01731 539 SMART ANK_2a 54 83 IPR002110 GO:0005515
Pumo6g01731 539 SMART ANK_2a 187 216 IPR002110 GO:0005515
Pumo6g01731 539 SMART ANK_2a 120 150 IPR002110 GO:0005515
Pumo6g01731 539 SMART ANK_2a 154 183 IPR002110 GO:0005515
Pumo6g01731 539 SMART ANK_2a 87 116 IPR002110 GO:0005515
Pumo6g01731 539 FunFam S-acyltransferase 10 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01731 Pumo-Chr6 26067187 26077143 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01731 28 202 Ion Channels AT2G25600 30.337 7.84e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01731 K20032 - gmx:100798740 1050.81