Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01716 ATGGGAAGGACACCATGTTGTGACAAGAAGGGTTTGAAGAAAGGACCTTGGACAGCTGAAGAGGATGAAATTCTTTCTAGTTATATCAAGAAAAATGGTGGCCATGGAAGCTGGCGTTCTCTTCCAAGGATGGCAGGTCTTCTTCGTTGTGGCAAGAGTTGTAGGCTTAGGTGGACAAACTATCTCAGACCTGACATCAAGCGTGGTCCCTTTACTCTTGAGGAAGAAAAACTAGTCATACAGCTTCATGGCATCCTAGGAAATAGGTGGGCTGCAATTGCTTCTCAGTTACCAGGGAGAACAGACAATGAGATAAAGAACTTATGGAACACCCACTTGAAGAAGCGTCTGAAAAGCATGGGGCTTGACCCCAAAACCCACGAGCCATTGGCCTCATCAACTTACCCTTTTCACAAGGCACCTGCATCTGTCTCCACACGCCACATGGCTCAGTGGGAGAGTGCTAGGCTCGAAGCCGAGGCCAGGCTCTCAAACGAGTCATCAAGGTTCAGCCACAACAATCCCAACTCAGATACCAAAACCACTGATTCTGACTACTTTCTCCGCATTTGGAACTCTGAAGTTGGAGAGTCATTTCGCAATGTTCATCACAAAGCTGATAACAACAACAAAATCACTACCACTACTACTACTAGTTCCTGCCACAGTCCTCCTGTTTCTGCAGGATCATCTTCCAACAAGTGTGAGTCAACAATTGCTACAAATGCAGACTTGGCTTCTAATGCACAAGAAATCACACTCACACCCTCTAGCATTGTGAAACAAGAGTTGGAGTGGGGGACTCGTGGATCCGACTCATCAAGCTCTAATGACATGGAAGACTCATCAGACACTGCTTTGCAGCTCTTGTTGGATTTTCCTATAAACAATGATATGAGCTTCTTGGAAGGAAACTCTTTTGTGTGTCCACTTTAG 936 0.4573 MGRTPCCDKKGLKKGPWTAEEDEILSSYIKKNGGHGSWRSLPRMAGLLRCGKSCRLRWTNYLRPDIKRGPFTLEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLKSMGLDPKTHEPLASSTYPFHKAPASVSTRHMAQWESARLEAEARLSNESSRFSHNNPNSDTKTTDSDYFLRIWNSEVGESFRNVHHKADNNNKITTTTTTSSCHSPPVSAGSSSNKCESTIATNADLASNAQEITLTPSSIVKQELEWGTRGSDSSSSNDMEDSSDTALQLLLDFPINNDMSFLEGNSFVCPL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01716 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pumo6g01716 311 SMART sant 67 115 IPR001005 -
Pumo6g01716 311 SMART sant 13 64 IPR001005 -
Pumo6g01716 311 Gene3D - 69 134 - -
Pumo6g01716 311 MobiDBLite consensus disorder prediction 166 183 - -
Pumo6g01716 311 MobiDBLite consensus disorder prediction 163 183 - -
Pumo6g01716 311 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pumo6g01716 311 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pumo6g01716 311 MobiDBLite consensus disorder prediction 263 283 - -
Pumo6g01716 311 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 250 - -
Pumo6g01716 311 FunFam MYB transcription factor 70 117 - -
Pumo6g01716 311 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pumo6g01716 311 MobiDBLite consensus disorder prediction 208 234 - -
Pumo6g01716 311 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pumo6g01716 311 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Pumo6g01716 311 CDD SANT 16 62 IPR001005 -
Pumo6g01716 311 MobiDBLite consensus disorder prediction 202 234 - -
Pumo6g01716 311 CDD SANT 70 113 IPR001005 -
Pumo6g01716 311 Gene3D - 11 68 - -
Pumo6g01716 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pumo6g01716 311 FunFam Myb transcription factor 11 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01716 Pumo-Chr6 25870594 25873027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01716 1 305 MYB Transcription Factor Family AT3G61250 62.783 5.85e-124 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo6g01716 Myb_DNA-binding 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01716 K09422 - gmx:100800408 571.237