Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo6g01711 | ATGGCTTCCTCGGAGATCGAGGTGGTATCATCATCGGTCTCCAAACCCAACGACCAGCCTCCAATCCTCGACGTCTTCACCGCCTCTGCTCACGGCGACTTCAACAAATTGAGAACCTTCGTCGAACAAGACGGTGCCTCCGTCTCTGTTCCCGATTTTAACGGCTATTACGCTCTTCAATGGGCCTCGCTCAACAACTTCCACCACATTGCACACTATCTCATTCAGCATGGGGCGGATGTCAATGCTAAAGACAACATGCAACAAACGGCATTGCATTGGGCGGCGGTTCGTGGTTCAACTCTAGCTGCTGATGTTCTTGTGGAGAATGGTGCTCGGGTTGAAGCTGCAGACGTAAATGGATACCGGGCAGTTCATGTTGCTGCACAATATGGACAGACAGCTTTCTTAAATCACATTGTAGTAAAGTACCATGCTGATTTTGATGTGCCTGATAATGATGGAAGGAGTCCTCTTCATTGGGCTGCATATAAGGGATTTGCTGACACAATAAGATTGCTTCTATTTAGAGATGCAAGTCAAGGAAGACGAGATAAAGATGGTTGTACACCGTTGCACTGGGCTGCATTAAGAGGAAATGCAGAGGCATGCGCTGTGCTTGTACATGCAGGCACAAAGGAAGAACTGATGGTGAAGGACAATGCTGGGCACACACCTGTACAGCTTGCATATGATAAAGGTCATCGGCATGTCGCTCCTTTCCTTTCAAATCAACAACGGGCTCATAGCAACTACTGGAAAGGGAAACTGTGTAGTTGGATGGTGACAGATATTGGTTATGCTCCCATCTTATTGTGTACTATAATCTTTTGCATGATCCTCTTCATCAACTCAGTCGTTGCAGCTCCTAACCTTAAAAAGATTACTGCCGTTGTTGGACTTTGGGCATGGATGGCACTTTCTTCGGCAGTTGGTGCCCTGATTATGTTCTATAAGTGTAGTAGTAAAGATCCTGGTTATATAAAACGGCCAGGAGACTTGGGTACTCAAAGTGATACAGAGGATCCTTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAATTGGTCTCAACTTTGCCCTACCTGCAAGATAATAAGACCTGTCCGATCTAAGCATTGCCCAACTTGTAAGCGATGTGTGGAACAGTTCGACCACCATTGTCCATGGATATCTAACTGTGTTGGGAAGAGGAACAAAAGGGATTTCTTTATTTTTATCTGCCTGGGAACTTTGACTTCTTCCCTTTCTGGTGCCGTTGCAGTTCAAAGAATTTGGACATCTACACTGGCATTACTGCCAGGAGAAACATGGATCCATTATGTGTTAGTAAGACATCCAGGTTTAGTTGTGTTTTTGGTGATCGATGCTGTTGTTTTCATTGCGGCTACGACATTAACGATAACACAGGCTTCCATGATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTACGATTATCTTCGTGGTCCTGATGGGCGGTTCAGAAACCCATATAACCACGGTTATTGGAAGAATTGTGCTGACTTCCTTTTTCTGGGCTATACAAATGATGATGAAATTGCTTGGCCTCCATTACAGCAGAGCACAAAGAAATAA | 1620 | 0.4469 | MASSEIEVVSSSVSKPNDQPPILDVFTASAHGDFNKLRTFVEQDGASVSVPDFNGYYALQWASLNNFHHIAHYLIQHGADVNAKDNMQQTALHWAAVRGSTLAADVLVENGARVEAADVNGYRAVHVAAQYGQTAFLNHIVVKYHADFDVPDNDGRSPLHWAAYKGFADTIRLLLFRDASQGRRDKDGCTPLHWAALRGNAEACAVLVHAGTKEELMVKDNAGHTPVQLAYDKGHRHVAPFLSNQQRAHSNYWKGKLCSWMVTDIGYAPILLCTIIFCMILFINSVVAAPNLKKITAVVGLWAWMALSSAVGALIMFYKCSSKDPGYIKRPGDLGTQSDTEDPLLNIDLNSSSVWMGNWSQLCPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFICLGTLTSSLSGAVAVQRIWTSTLALLPGETWIHYVLVRHPGLVVFLVIDAVVFIAATTLTITQASMIARNVTTNELANSSRYDYLRGPDGRFRNPYNHGYWKNCADFLFLGYTNDDEIAWPPLQQSTKK | 539 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo6g01711 | 539 | ProSiteProfiles | Ankyrin repeat region circular profile. | 54 | 86 | - | - | |
| Pumo6g01711 | 539 | ProSiteProfiles | Ankyrin repeat profile. | 87 | 119 | IPR002110 | GO:0005515 | |
| Pumo6g01711 | 539 | ProSiteProfiles | Ankyrin repeat profile. | 154 | 186 | IPR002110 | GO:0005515 | |
| Pumo6g01711 | 539 | FunFam | S-acyltransferase | 141 | 249 | - | - | |
| Pumo6g01711 | 539 | ProSiteProfiles | Ankyrin repeat region circular profile. | 87 | 118 | - | - | |
| Pumo6g01711 | 539 | ProSiteProfiles | Ankyrin repeat profile. | 187 | 219 | IPR002110 | GO:0005515 | |
| Pumo6g01711 | 539 | Gene3D | - | 141 | 254 | IPR036770 | - | |
| Pumo6g01711 | 539 | ProSiteProfiles | Ankyrin repeat region circular profile. | 187 | 211 | - | - | |
| Pumo6g01711 | 539 | ProSiteProfiles | DHHC domain profile. | 361 | 411 | - | - | |
| Pumo6g01711 | 539 | ProSiteProfiles | Ankyrin repeat profile. | 120 | 153 | IPR002110 | GO:0005515 | |
| Pumo6g01711 | 539 | PANTHER | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED | 13 | 524 | - | - | |
| Pumo6g01711 | 539 | Gene3D | - | 22 | 140 | IPR036770 | - | |
| Pumo6g01711 | 539 | SUPERFAMILY | Ankyrin repeat | 26 | 244 | IPR036770 | - | |
| Pumo6g01711 | 539 | ProSiteProfiles | Ankyrin repeat region circular profile. | 154 | 186 | - | - | |
| Pumo6g01711 | 539 | ProSiteProfiles | Ankyrin repeat profile. | 54 | 86 | IPR002110 | GO:0005515 | |
| Pumo6g01711 | 539 | Pfam | Ankyrin repeats (3 copies) | 29 | 117 | IPR002110 | GO:0005515 | |
| Pumo6g01711 | 539 | Pfam | Ankyrin repeats (3 copies) | 118 | 183 | IPR002110 | GO:0005515 | |
| Pumo6g01711 | 539 | Pfam | Ankyrin repeats (3 copies) | 185 | 244 | IPR002110 | GO:0005515 | |
| Pumo6g01711 | 539 | Pfam | DHHC palmitoyltransferase | 361 | 488 | IPR001594 | GO:0016409 | |
| Pumo6g01711 | 539 | SMART | ANK_2a | 222 | 252 | IPR002110 | GO:0005515 | |
| Pumo6g01711 | 539 | SMART | ANK_2a | 54 | 83 | IPR002110 | GO:0005515 | |
| Pumo6g01711 | 539 | SMART | ANK_2a | 187 | 216 | IPR002110 | GO:0005515 | |
| Pumo6g01711 | 539 | SMART | ANK_2a | 120 | 150 | IPR002110 | GO:0005515 | |
| Pumo6g01711 | 539 | SMART | ANK_2a | 154 | 183 | IPR002110 | GO:0005515 | |
| Pumo6g01711 | 539 | SMART | ANK_2a | 87 | 116 | IPR002110 | GO:0005515 | |
| Pumo6g01711 | 539 | FunFam | S-acyltransferase | 10 | 140 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo6g01711 | Pumo-Chr6 | 25817946 | 25827868 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo6g01711 | 28 | 202 | Ion Channels | AT2G25600 | 30.337 | 8.18e-12 | 66.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo6g01711 | K20032 | - | gmx:100798740 | 1044.65 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Pumo6g01711 | 6 | 25817946 | 25827868 | Pumo6g01711 | 6 | 25817946 | 25827868 | ECH |