Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01700 ATGGGGAGAGGAAAGATTTCCATTCGAAGAATCGAAAATTCGACGAACCGGCAAGTAACTTTCTGCAAGAGAAGAAATGGGTTACTGAAGAAAACTAGAGAACTATCTGTTCTCTGTGATGCAGAAATTGGAGTGATTGTGTTTTCCTGCACAGGCAAGCTTTATGAATATTCAAACACCAGCATGAAATCGATCATTGAGCGCTTTAACATGCAAAAAGAGGACCATCATCGACTAATGGATCCTGCTTCAACAGTCAAGTTTTGGCAGAGAGAAGCAGCAAGCTTGAAGCAACAACTACAACATTTGCAAGAAAGCCACGGGCAACTGATGGGTGAAGAACTTTCTGGTTTGGATTTTAATCAGCTAAAGCAACTGGAAAATCAACTGCAAATGAGTTTGAATAACGTTCGCATAAAAAAGGATCAAATTTTTAGAGATGAGATCAAAGAATTACAACAAAAGGGAAGCTTCATTCATCGACAAAATGGAGAACTTCATAAGAAGATAGACCTTATCCATAAAGAAAATGCAGAACTGCAGAAGGTTGTTGAAGCAAGGCTTGAGGAAGAAGAAAGGGCAGCACTCAATCCTCCACATGCTATCAGAAATGGATATGATATACTTTACCCTAACAATATGCAACAAAGCCAGCCTCAGCTTCAGCCTCAGCCTCAACCTCCACCAGCGGAAGCGATGATTCTGGGGTACTCCCTCAAATTGAAGATGTAA 732 0.4057 MGRGKISIRRIENSTNRQVTFCKRRNGLLKKTRELSVLCDAEIGVIVFSCTGKLYEYSNTSMKSIIERFNMQKEDHHRLMDPASTVKFWQREAASLKQQLQHLQESHGQLMGEELSGLDFNQLKQLENQLQMSLNNVRIKKDQIFRDEIKELQQKGSFIHRQNGELHKKIDLIHKENAELQKVVEARLEEEERAALNPPHAIRNGYDILYPNNMQQSQPQLQPQPQPPPAEAMILGYSLKLKM 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01700 243 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo6g01700 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo6g01700 243 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Pumo6g01700 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pumo6g01700 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo6g01700 243 Coils Coil 123 143 - -
Pumo6g01700 243 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo6g01700 243 Coils Coil 86 113 - -
Pumo6g01700 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 214 - -
Pumo6g01700 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pumo6g01700 243 Gene3D - 13 108 IPR036879 GO:0003677|GO:0046983
Pumo6g01700 243 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Pumo6g01700 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo6g01700 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo6g01700 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01700 Pumo-Chr6 25627007 25659260 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01700 1 241 MADS-box Gene Family AT2G14210 56.327 1.50e-79 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo6g01700 K-box 7.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01700 K09264 - gmx:100779119 359.762