Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01698 ATGGCTTTGCGATCCAATTCCTCTTCCTTCAGCTACAATGTGTTCCTCAGCTTCAGAGGGGAAGACACACGTCATGGTTTTACTGGCAATCTCTACAAAGCTCTTCGTGACAAGGGAATTCACACTTTCATTGATGATGAGAAGCTTCAGAGAGGAGAGGAAATAACGCCAGCACTTGTGAAAGCAATTGAAGAGTCCAGGATTGCCATTACTGTGCTCTCTAATGACTATGCTTCTTCCTCATTTTGCTTAGATGAACTTGCAACCATCCTTCACTGCAAGAGGAAAGGGCTGTTGGTTATACCAGTCTTTTATAATGTGGACCCTTCTGATGAGAGACACCAGAAAGGTAGTTATGGAGAAGAAATGGCTAAGCATGAGAAAAGGTTCAAAGCTAAGAAGGACAAGTTGCAGAAATGGAAAATGGCTTTGCGTGAAGTAGCTGACTTGTCTGGCTTTCATTTCAAAGATGGAGATGGATATGAATACAAGTTTATTGAGACAGTTGTTGAGCAGGCCTCAAGGAAGATTAATCGTGTTCCTTTACATGTTGTAAATTACCCAGTTGGCCTAGGGTCACAAGTGCTAGAGGTAAGGAAGCTTTTGGATGTTGGATGTGAGGATGGTGTCCACATGATAGGGATCCATGGAATGGGTGGGGTAGGAAAATCAACACTTGCTCGAGCTGTCTATAATAATTTAATTGCTGAGAATTTTGATAGTTTGTGTTTCCTTCAAAATGTGAGAGAAAAATCAAACAAACATGGGTTAGAAAAGCTCCAAAGCACCCTTCTTTCGGAAATACTTGGAATGAAGGAAATTAAATTAGCAAGTGTGGAACAAGGAATTTCAGTGATACAACATAGGCTCCAACGAAAGAAGGTTCTCTTGATTCTAGATGATGTTGACAAGCACGAGCAATTACAGGCAATTGTTGGGAGACCAGATTGGTTTGGTCCCGGAAGCAGAGTCATCATCACCACTCGAAACAAACAACTGCTGGCATTTCATGAGGTTGAAAGGACATATGAGGTGAAGAAATTGAATAAGAATGATGCTCTTCAGCTGCTTACATGGAAAGCTTTTAAAAAGGAGAAAGCTGATCCAAGATATGTGAAGGTCTTGAATCGTGTGGTAACTTATGCTTCTAGCCTTCCATTGGCCTTGGAAGTAATAGGTTCCGACTTGTTTGGAAAAAGTATTGAAGACTGGGAATCTGCCATAAATCAGTATAAAAGAATTCCTCATAATCAAGTCCAAGAGATTCTTAAAGTAAGCTTTGATGCTTTGCAGGATGAAGAGAAAAGTATTTTTCTTGACATTGCTTGTTGCTTCAATGGGTATGAATTGAGAGAGGTAGAAGATATACTTCGTACTCATTATGGTCACAGCATGAAATATCATATTGGCGTGTTGGCTGAAAAATCACTCATAAAGGAGCTTAGATGGTCACGGTATGATAGAGTTACTGTTACATTGCATGACTTGATTGAGAATATGGGTAAAGAGATTGTCCAGCAAGAATCACCAAAACAGCCAGGGAATCGGAGTAGATTATGGTCACCAGAAGATGTAAGAAAAGTTTTAGAAGACAACACGGGAACCTGTGAAAGTGAAATCATATGTGTGGATTTCCCCTTATCTGACAAAAAAGAAACAGTAGAATGGAATGGAAACGCCTTCAAGAAGATGAAAAACCTTAAAACACTTATTATTAAAAATGAAATATTAGGAGAGATGGAAAACATAAGGACACTTCAATTGATTGACCTTCCCATAAAAGAATTGCCAGTTTCATTTCAAAATCTGATTGGACTCCAAATATTATTCCTGGATTGTGGAATTGTTCAGTTACGAAGTAGCATTTTCACGATGCCTGAACTGTCTGTATTTGACGCTCGACATTGCAAGGGGTGGCAATTGGTAAAATCGGAAGAGGGTGTAGAAAATGTGGGCTCAATAGTATCTTCAAAGGAACTGCATGAGTCTGGAAAAACCATGTTTTGGTTTCCAAGAGCAAGTATTCCAAAGTGGTTCGATCACCAAAGCAGTGGACCTTCAAGTTCTTTCTGGTTTCGTAATAAGTTCCCTGCCAAAGTCCTTTCTATTCTTATTGCACCTGTGCCCATGAAGTTTGGATTCCTTAGACCCATGGTGTTCATCAATGGCAAAGTTCAAGAATCTGGCTTTTATCATGGTGACAAGGAGATGCTGGAATTGGATCATACATATCTCTTTGATCTAGAGTTACGTATCGATAATAATCTGTTTAAAGTGCCTTTAGAAAATGAATGGAACCATGTGGAGGTTACATATGAAGATGTGTTAGATACCTCACTCGTTAAAGCAACCGGAATCCATATATTCAAACAGGAAAGCAGCAGCATGGACGATATTCGATTTGATGATCCTTATAGCAACACAAAAGTAGATGATTATCTCAACAGTTCGGAATCACAAAACCACTCGCTGTTAAAAAGCATAGATTCTCATAAACTCGACTTAATGCAACCAGTTTTCACCCCTAATCTTCATCATGTACTTTTGACTCATGCCACGAGTTTTAATTCTGCATGTGAAGTGCTAATGAGATGA 2595 0.3934 MALRSNSSSFSYNVFLSFRGEDTRHGFTGNLYKALRDKGIHTFIDDEKLQRGEEITPALVKAIEESRIAITVLSNDYASSSFCLDELATILHCKRKGLLVIPVFYNVDPSDERHQKGSYGEEMAKHEKRFKAKKDKLQKWKMALREVADLSGFHFKDGDGYEYKFIETVVEQASRKINRVPLHVVNYPVGLGSQVLEVRKLLDVGCEDGVHMIGIHGMGGVGKSTLARAVYNNLIAENFDSLCFLQNVREKSNKHGLEKLQSTLLSEILGMKEIKLASVEQGISVIQHRLQRKKVLLILDDVDKHEQLQAIVGRPDWFGPGSRVIITTRNKQLLAFHEVERTYEVKKLNKNDALQLLTWKAFKKEKADPRYVKVLNRVVTYASSLPLALEVIGSDLFGKSIEDWESAINQYKRIPHNQVQEILKVSFDALQDEEKSIFLDIACCFNGYELREVEDILRTHYGHSMKYHIGVLAEKSLIKELRWSRYDRVTVTLHDLIENMGKEIVQQESPKQPGNRSRLWSPEDVRKVLEDNTGTCESEIICVDFPLSDKKETVEWNGNAFKKMKNLKTLIIKNEILGEMENIRTLQLIDLPIKELPVSFQNLIGLQILFLDCGIVQLRSSIFTMPELSVFDARHCKGWQLVKSEEGVENVGSIVSSKELHESGKTMFWFPRASIPKWFDHQSSGPSSSFWFRNKFPAKVLSILIAPVPMKFGFLRPMVFINGKVQESGFYHGDKEMLELDHTYLFDLELRIDNNLFKVPLENEWNHVEVTYEDVLDTSLVKATGIHIFKQESSSMDDIRFDDPYSNTKVDDYLNSSESQNHSLLKSIDSHKLDLMQPVFTPNLHHVLLTHATSFNSACEVLMR 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01698 864 Gene3D - 347 431 IPR042197 -
Pumo6g01698 864 PRINTS Disease resistance protein signature 382 396 - -
Pumo6g01698 864 PRINTS Disease resistance protein signature 212 227 - -
Pumo6g01698 864 PRINTS Disease resistance protein signature 289 303 - -
Pumo6g01698 864 Pfam TIR domain 12 178 IPR000157 GO:0007165
Pumo6g01698 864 ProSiteProfiles TIR domain profile. 10 177 IPR000157 GO:0007165
Pumo6g01698 864 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 179 - -
Pumo6g01698 864 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 644 IPR044974 GO:0006952
Pumo6g01698 864 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 153 IPR035897 -
Pumo6g01698 864 Pfam NB-ARC domain 197 425 IPR002182 GO:0043531
Pumo6g01698 864 SMART AAA_5 209 349 IPR003593 GO:0016887
Pumo6g01698 864 SUPERFAMILY "Winged helix" DNA-binding domain 418 530 IPR036390 -
Pumo6g01698 864 SMART till_3 11 150 IPR000157 GO:0007165
Pumo6g01698 864 SUPERFAMILY L domain-like 493 636 - -
Pumo6g01698 864 Gene3D Ribonuclease Inhibitor 552 683 IPR032675 -
Pumo6g01698 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 441 IPR027417 -
Pumo6g01698 864 Gene3D - 174 341 IPR027417 -
Pumo6g01698 864 Gene3D - 9 173 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01698 Pumo-Chr6 25529597 25533588 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01698 7 608 WRKY Transcription Factor Family AT4G12020 29.048 8.86e-54 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01698 - - gmx:100780257 821.231