LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo6g01697	ATGAAGACCACCACCGCCCCACGGGTTCGTCAGAAATCGCGTCCAGCGGTGAGTGAAGGCGGATTGGTCGGAGAATGGAGGAGGGTTCCGACAGTGAACTTGTCGGAGCGGAGGAGGGAACGAAAGCAGCCGCAGCACAATACGGTGGTTGTGATCCCCGCTCGTTTTTTATGCATAGAGTACCATTTTGTTCATCCTAAAATCTCCATTGCAAATGCTCTGGCTCAGTCTTTTGATTTCCCCAACTTCAATTCAACTTATGTAAAGCAGCTTAAGCTGGATGGTAATGCTTCTACCTCAGGTTCTGCTATCCAACTCACAGTGAACGCAACGGACCAAAGCAACTACTGGTTAGGGACTGCAGGGCGAGTCACATACCCCGAGCAAATAAACCTCAGGGACAACAACTCAAATGAACCAAAGGACTTCATCACCAACTTTTCCTTTGTTGTTTACTCAAATAAGAGCCATTTTGGAGATGGTTTGGCATTCTTCCTAGCAAGCCCAAATCTGCCATCCACAAATGACATAGTACAACTAAGAGGAGGAAGCCTTGGCATTGGCCTTCCAAAACATTACCAAATTCTTCTCCACAAAGTTTATCAATTTGTGGCAGTGGAGTTTGACACTTACTCAAACCCCTGGGACCCAGATGGTGCACATGTAGGTATAAATATCAATGATATGAAGTCTAAAATACTTGAGACATGGTGGACAAATATTAGACAAAGGGAAGTTTGTAACTGTAGTATTGTATACAATTCTAGAAGCAATATTTTGAATGTCTCTTACACTGGATACAAATCCAGTGGTGGGAATGTAACACAGACTACACAGAACCTTTCATTCCAAGTTAATATCACTGAGCAATTACCGGATTCGGTTATTGTTGGCATATCAGCTGCAACAGGAGAATATTATGAGGAACATGCCCTGCTGTCATGGTCATTTAGTACTAGTACAAGCCCACCAAGTAAGGTCGATGCAGAGGAGGAAAGTGAGTTAAACAACACAAAACTGTTGGAGGGAATAGCAATTGGTATGGGTTTGTTTTTGAGTTTGTTAGGCTTGGTTCACATTTTATTAGGGAGGATGACCAAGGGAAAAGAAGAAGATTGCACTTCAGAAGCCACTTCTGATCTGAAGATGATTGATGAATTCCAAATGAGAACTGGACCTAAGAAGATTAGTTATTATGAATTGGCAACTGCAACCAACAACTTTGAAGAGACACAGAAGCTTGGCCAAGGTGGTTTTGGTGGTGTTTATAAAGGCTATTTCAAAGACTCAAACACCTATGCTGCTATAAAGAGGATATCAGCAAATTCGAGACAGGGTGTAGAACAATACACAGCAGAAGTGATGATCATTGGCCAATTGAGGCACAAGAATTTGGTAAAACTCACTGGTTGGTGCCATAAGAAGAATGATTTCCTCCTGATATACGAGTACATGGAAAATGGCAGCTTAGATTCTCACCTTTTTCGCGGAGAAAGCGTCTTGTCATGGCAGGTGAGGTACAACATAGCTCTGGGCCTGGCCTCAGCATTGCTTTACCTACAAGAAGAGTGGGAAAAATGTGTTCTTCATATGGACATCAAATCAAGCAACATAATGTTGGACTCCAACTTCAACCCTAAGCTTGGGGATTTTGGCCTGGCTAGGCTAGTGGATCATGATAAAGGGTCAGAAACCACAGAAGTGGCTGGGACCAAGGGTTACCTTGCCCCTGAATACATGAACACAGGAAAGGCTCGAAAGGAATCCGACATATTCAGTTTTGGGGTTGTTCTATTGGAGATAGCCACTGGAAGAAAAGCCATTCAGCACAAATACATGGAGGGTGAAGTATCAGTAGTTGAGTGGGTGTGGGAGCTCTATGGATTGAGAAATCTCATTGAAGCAGCAGATGCAAACCTATGTGGGGAATTTGATGTGCAGCAAATGGAATGCTTATTGGTTGTTGGTCTTTGGTGTGCAAATCCAGATTTTGCATCCAGACCCTCTATAAGGCAAGTGATTAACCTGCTTAACTTTGAAGCTTCTTTACCAATTCTCCCACAACAGATCCCAATGCAAGCCTATGTCTGTCCAGTGTCCAATAGCAAATGA	2112	0.4318	MKTTTAPRVRQKSRPAVSEGGLVGEWRRVPTVNLSERRRERKQPQHNTVVVIPARFLCIEYHFVHPKISIANALAQSFDFPNFNSTYVKQLKLDGNASTSGSAIQLTVNATDQSNYWLGTAGRVTYPEQINLRDNNSNEPKDFITNFSFVVYSNKSHFGDGLAFFLASPNLPSTNDIVQLRGGSLGIGLPKHYQILLHKVYQFVAVEFDTYSNPWDPDGAHVGININDMKSKILETWWTNIRQREVCNCSIVYNSRSNILNVSYTGYKSSGGNVTQTTQNLSFQVNITEQLPDSVIVGISAATGEYYEEHALLSWSFSTSTSPPSKVDAEEESELNNTKLLEGIAIGMGLFLSLLGLVHILLGRMTKGKEEDCTSEATSDLKMIDEFQMRTGPKKISYYELATATNNFEETQKLGQGGFGGVYKGYFKDSNTYAAIKRISANSRQGVEQYTAEVMIIGQLRHKNLVKLTGWCHKKNDFLLIYEYMENGSLDSHLFRGESVLSWQVRYNIALGLASALLYLQEEWEKCVLHMDIKSSNIMLDSNFNPKLGDFGLARLVDHDKGSETTEVAGTKGYLAPEYMNTGKARKESDIFSFGVVLLEIATGRKAIQHKYMEGEVSVVEWVWELYGLRNLIEAADANLCGEFDVQQMECLLVVGLWCANPDFASRPSIRQVINLLNFEASLPILPQQIPMQAYVCPVSNSK	703

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo6g01697	703	CDD	lectin_legume_LecRK_Arcelin_ConA	77	315	IPR001220	GO:0030246
	Pumo6g01697	703	MobiDBLite	consensus disorder prediction	1	20	-	-
	Pumo6g01697	703	Gene3D	Transferase(Phosphotransferase) domain 1	485	698	-	-
	Pumo6g01697	703	SUPERFAMILY	Concanavalin A-like lectins/glucanases	74	324	IPR013320	-
	Pumo6g01697	703	CDD	STKc_IRAK	414	678	-	-
	Pumo6g01697	703	ProSitePatterns	Legume lectins beta-chain signature.	204	210	IPR019825	-
	Pumo6g01697	703	ProSiteProfiles	Protein kinase domain profile.	408	686	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo6g01697	703	ProSitePatterns	Protein kinases ATP-binding region signature.	414	437	IPR017441	GO:0005524
	Pumo6g01697	703	Gene3D	Phosphorylase Kinase; domain 1	393	484	-	-
	Pumo6g01697	703	PANTHER	-	108	679	-	-
	Pumo6g01697	703	Pfam	Legume lectin domain	76	328	IPR001220	GO:0030246
	Pumo6g01697	703	SUPERFAMILY	Protein kinase-like (PK-like)	392	691	IPR011009	-
	Pumo6g01697	703	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	528	540	IPR008271	GO:0004672\|GO:0006468
	Pumo6g01697	703	FunFam	L-type lectin-domain containing receptor kinase IX.1	393	484	-	-
	Pumo6g01697	703	SMART	serkin_6	408	679	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo6g01697	703	Pfam	Protein kinase domain	408	674	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo6g01697	703	FunFam	Lectin-domain containing receptor kinase A4.3	485	697	-	-
	Pumo6g01697	703	Gene3D	-	74	340	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo6g01697	Pumo-Chr6	25523113	25528026	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo6g01697	78	695	Receptor kinase-like Gene Family	AT5G10530	42.789	6.03e-160	474

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Pumo6g01697		Pkinase	5.1e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo6g01697	-		-	vum:124829843	890.182