LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo6g01691	ATGATGGGGGAAACTCCTGGGGAAGAACAGACTGGTGAGGAAGAGAACGTGATGTCGAAGTTTACAAAGAAGTCCTCAATCTCACCAGGTATGAGAAAGATAGTTTTGGTAGAGTCATATATAACAAACAGTTGCATCTTTGGGACAAGAACTCAGGTAAGGTCACAAACTTCACTACCCGTTTCTCCTTTACCATCAACACCCGAAATAAAACCGGATTTGGAGATGGTATCACCTTCTTTCTGGCACACCCAAACTTTCCAGAACCCGTTCCGAGAGATGGCACATGGCAGTGGTATTGGTCTTCTGAGCAGTACTCAGCTGAAGACTCCAAATTACACAAAGGAACATCCATTCGTAGCAGTGGAATTTGATACCTCTGTTAATGACTTTGATCCTACATATCATCATGTGGGTATCGATGTTAATTATGTTAACACTTCTGCCACTACAGAATGGTTCACTAGCAACGATCAGAGAGGATATGATGCTGATATTAGCTACAATTCTAGTTCAAACAATTTAAGTGTCACCTTCACTGGATATAAGGATAACGTCACAATTAAACAGAACTTACACAAAGTGGTCAATTTGAGAGATATCTTACCTGAATGGATTGAATTTGGCATCTCTTCAGCAACAGGATTGTCTTGGGAGGATCATACTCTTAGCTTGTGGTCCTTCCACTCTAGTTTAGACTTCGATTCACACAGCGGTGGAAGCAAAATAGGCTTGGCAGTGGGGTTGGGCATCGGTGGATTTGTTTTGATTGGTGGGTTGGGTTTGATTTCAATTGTCTTGTGGAAGAAGTGGAAGAAAGGAACTGAAGAGGAAGATCATGATTTTGAAGAGTATATGGGTGAGGATTTTGGAAGGGGGGCAGGACCCAAGAAGTATTCATACGCTGAATTAGCACAAACAGCTAATGGTTTCAAAGATGAGCACAAGCTAGGACAGGGAGGATTTGGAGGTGTTTATAGGGGTTATCTTAAAGACATAAAGTCTCATGTTGCTATCAAGAGGGTGTCAGAAGATTCCCATCAAGGGATAAAGGAGTTTGCCTCAGAAGTAAGAATTATTAGCCGGTTAAGGCATCGAAATCTAGTGCACTTGATTGGTTGGTGTCATGAAAGGAAAAAGCTCTTGCTTGTGTATGAGTACATGCCAAATGGAAGCTTAGACATTCATCTTTTCAAGAAGCAAAGTTTGTTGAAATGGGCGGTGAGATATAATATAGCTCGAGGATTGGCCTCTGCATTGCTATACTTGCATGAAGAATGGGAACAATGTGTTGTGCATAGAGACATAAAGTCAAGCAACATTATGCTGGATTCAGAGTTTAATGCCAAACTTGGAGATTTTGGTTTAGCAAGGTTTGTGGACCATGCAAAAAGTGCACAAACTACAGCTTTAGCTGGCACTATGGGCTATATGGCTCCTGAATGTACTTTGGGCTACAGGCCTGCTAGTAAGGAATCAGATGTGTACAGTTTTGGAGTTGTTGCTTTAGAGATAGCTTGTGGAAGAATACCCATAAACCATTATGCTCAAGAAAATGAAATAAATATTGTGCAGTGGGTGTGGGGACTCTATGGAGAAGAGAGAATTCTTGAAGCAGCAGATCCAAGACTAGAAGGGGATTTTGAGGAGGAGCAAATCAAATGCTTGATGATTGTTGGTCTTTGGTGTGCTCACCCAAACCATAATAATAGGCCTTCAATGAGGCAAGCAATTCAAGTGCTTAACTTTGAAGCTCCCTTGCCTAATCTTCCATCAAGTTTGTCAGTTCCAACATATCTTGAAGGCCCCCTGCACTCATCCATAGCACCATTCAGCATAACTGCTTCAGAGGATGGTCAAACCAAGATCACAAGCTCCAGTTCAAACACAAACTCCACCGGGTTCACCACAACTTCTGATGATGCTTCTCCCTCTGTGTCGCTTCTGTACTCACTGTGA	1959	0.4206	MMGETPGEEQTGEEENVMSKFTKKSSISPGMRKIVLVESYITNSCIFGTRTQVRSQTSLPVSPLPSTPEIKPDLEMVSPSFWHTQTFQNPFREMAHGSGIGLLSSTQLKTPNYTKEHPFVAVEFDTSVNDFDPTYHHVGIDVNYVNTSATTEWFTSNDQRGYDADISYNSSSNNLSVTFTGYKDNVTIKQNLHKVVNLRDILPEWIEFGISSATGLSWEDHTLSLWSFHSSLDFDSHSGGSKIGLAVGLGIGGFVLIGGLGLISIVLWKKWKKGTEEEDHDFEEYMGEDFGRGAGPKKYSYAELAQTANGFKDEHKLGQGGFGGVYRGYLKDIKSHVAIKRVSEDSHQGIKEFASEVRIISRLRHRNLVHLIGWCHERKKLLLVYEYMPNGSLDIHLFKKQSLLKWAVRYNIARGLASALLYLHEEWEQCVVHRDIKSSNIMLDSEFNAKLGDFGLARFVDHAKSAQTTALAGTMGYMAPECTLGYRPASKESDVYSFGVVALEIACGRIPINHYAQENEINIVQWVWGLYGEERILEAADPRLEGDFEEEQIKCLMIVGLWCAHPNHNNRPSMRQAIQVLNFEAPLPNLPSSLSVPTYLEGPLHSSIAPFSITASEDGQTKITSSSSNTNSTGFTTTSDDASPSVSLLYSL	652

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo6g01691	652	MobiDBLite	consensus disorder prediction	620	646	-	-
	Pumo6g01691	652	Pfam	Protein kinase domain	311	579	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo6g01691	652	SMART	serkin_6	311	581	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo6g01691	652	ProSitePatterns	Protein kinases ATP-binding region signature.	317	340	IPR017441	GO:0005524
	Pumo6g01691	652	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	431	443	IPR008271	GO:0004672\|GO:0006468
	Pumo6g01691	652	CDD	STKc_IRAK	317	582	-	-
	Pumo6g01691	652	SUPERFAMILY	Concanavalin A-like lectins/glucanases	118	331	IPR013320	-
	Pumo6g01691	652	SUPERFAMILY	Protein kinase-like (PK-like)	296	599	IPR011009	-
	Pumo6g01691	652	PANTHER	-	71	588	-	-
	Pumo6g01691	652	Gene3D	Transferase(Phosphotransferase) domain 1	388	602	-	-
	Pumo6g01691	652	ProSiteProfiles	Protein kinase domain profile.	311	590	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo6g01691	652	ProSitePatterns	Legume lectins beta-chain signature.	120	126	IPR019825	-
	Pumo6g01691	652	FunFam	L-type lectin-domain containing receptor kinase IX.1	296	387	-	-
	Pumo6g01691	652	Gene3D	Phosphorylase Kinase; domain 1	296	387	-	-
	Pumo6g01691	652	MobiDBLite	consensus disorder prediction	1	24	-	-
	Pumo6g01691	652	Gene3D	-	81	244	-	-
	Pumo6g01691	652	FunFam	Lectin-domain containing receptor kinase A4.3	388	601	-	-
	Pumo6g01691	652	Pfam	Legume lectin domain	91	234	IPR001220	GO:0030246

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo6g01691	Pumo-Chr6	25399463	25404898	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo6g01691	97	599	Receptor kinase-like Gene Family	AT5G10530	49.903	4.70e-160	473

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Pumo6g01691		Pkinase	2.8e-53	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo6g01691	-		-	gmx:100782884	899.427