Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01686 ATGTTGCGGCTTTCGATTCAACGAGTGAGGAAGTTGAACCTTCTGAGGCCTCAGATCTCTGCTTTGGGAAGGTCCCATTTGTCAACTGCTGCTGAACCATCTTCCAGTAAGAGCAATCCACCGAGGGTTCCAAATCTTATTGGAGGCAGTTTTGTTGACTCAAAATCATCATCTGTCATTGATGTTATAAACCCAGCAACCCAAGAAGTTGTTTCACAAGTTCCTTTGTCTACTGATGAAGAGTTTAAGGCAGCTGTATCCGCAGCAAAGAAGGCATTTCCATCATGGCGTAACACTCCAATTACAACACGCCAACGCGTTATGTTGAAGCTTCAAGAGCTTATACGCAGAGATATGGATAAACTTGCTCTGAATGTGACCACTGAACAAGGAAAGACATTGAAGGATGCACAAGGAGATGTATTTCGTGGTTTAGAGGTGGTTGAACATGCTTGTGGGATGGCAACTCTACAAATGGGGGAGTATGTTTCCAATGTGTCACATGGAATCGATACTTACAGCATTCGAGAACCACTTGGTGTTTGCGCTGGTATTTGTCCTTTCAACTTTCCTGCGATGATTCCCTTGTGGATGTTCCCTATGGCTGTTACCTGTGGTAATACCTTTGTTCTAAAACCATCAGAGAAAGACCCAGGTGCTTCTGTAATGCTTGCAGAATTGGCGTTGGAGGCTGGTTTGCCTGAGGGTGTCTTAAATATAGTTCATGGAACCCATGATATTGTGAACGCTATTTGTGATGATGACGACATCAAAGCCATATCTTTTGTTGGTTCAAATGTTGCTGGAATGCACATATATTCAAGAGCAGCAGCTAAAGGGAAACGTGTTCAGTCTAACATGGGAGCCAAAAATCATGCAATTGTCATGCCAGATGCAAATGTTGATGCTACTCTTAATGCTTTAGTTGCTGCTGGTTTTGGTGCTGCTGGACAAAGGTGTATGGCTCTCAGCACAGTTGTTTTTGTTGGAGGCTCAAAACCATGGGAAGATAAACTTGTAGAGCGTGCCAAAGCTCTTAAAGTAAATGCTGGAACTGAACCTGATACAGACCTTGGTCCGGTGATCAGCAAGCAGGCAAAGGAGAGAATACACAAATTAGTTCAATCTGGGGTTGAAAGTGGTGCCAGACTACTGCTTGATAGAAGAAATATAGTGGTCCCAGGATATGAATCTGGCAATTTTATTGGCCCAACCATCTTATCAGATATCAATGCCAACATGGAGTGCTACAAGGAGGAAATTTTTGGCCCAGTTCTTCTTTTCATGGAGGCTGATAGCTTGGAAGAGGCCATAAACATTATCAACAGTAACAAGTACGGAAATGGTGCTTCCATATTTACTACATCTGGTGTTGCTGCAAGGAAATTTCAGACTGAGATAGAGGCTGGACAGGTTGGCATCAATGTTCCCATTCCAGTTCCTTTGCCCTTCTTCTCATTCACCGGCAACAAGGCATCGTTTGCCGGTGATCTCAACTTTTATGGCAAGGCAGGGGTGAACTTCTATACACAGATCAAGACAATAACACAGCAATGGAAGGATTCAACTGGTGGTAGCAAGATTAACTTGGCAATGCCAACCTCTCAAAAATAA 1614 0.4337 MLRLSIQRVRKLNLLRPQISALGRSHLSTAAEPSSSKSNPPRVPNLIGGSFVDSKSSSVIDVINPATQEVVSQVPLSTDEEFKAAVSAAKKAFPSWRNTPITTRQRVMLKLQELIRRDMDKLALNVTTEQGKTLKDAQGDVFRGLEVVEHACGMATLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPMAVTCGNTFVLKPSEKDPGASVMLAELALEAGLPEGVLNIVHGTHDIVNAICDDDDIKAISFVGSNVAGMHIYSRAAAKGKRVQSNMGAKNHAIVMPDANVDATLNALVAAGFGAAGQRCMALSTVVFVGGSKPWEDKLVERAKALKVNAGTEPDTDLGPVISKQAKERIHKLVQSGVESGARLLLDRRNIVVPGYESGNFIGPTILSDINANMECYKEEIFGPVLLFMEADSLEEAINIINSNKYGNGASIFTTSGVAARKFQTEIEAGQVGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFYTQIKTITQQWKDSTGGSKINLAMPTSQK 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01686 537 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 313 324 IPR016160 GO:0016491
Pumo6g01686 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 288 488 IPR016163 GO:0016620
Pumo6g01686 537 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 9 535 IPR010061 GO:0004491
Pumo6g01686 537 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 47 294 - -
Pumo6g01686 537 SUPERFAMILY ALDH-like 39 520 IPR016161 GO:0016491
Pumo6g01686 537 Pfam Aldehyde dehydrogenase family 51 515 IPR015590 GO:0016491
Pumo6g01686 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 47 496 IPR016162 GO:0016491
Pumo6g01686 537 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 45 519 IPR010061 GO:0004491
Pumo6g01686 537 CDD ALDH_F6_MMSDH 43 519 IPR010061 GO:0004491
Pumo6g01686 537 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 288 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01686 Pumo-Chr6 25309309 25315854 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01686 1 503 Aldehyde Dehydrogenase Gene Family AT2G14170 80.915 0.0 838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01686 K00140 - gmx:100791508 1009.59