Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01685 ATGGCTTCGCTCTGGTTCCTTAAACTGGCCCTCAAATGCCTTGATCACTTCGCATGGCCTGTTCTTGCTTTGGGGTATCCTCTATGTGCTTCCGTACAAGCAATAGAGACTGATTCCTATAAAGAAACTAGGGATTTGATCTCATACTGGATACTTCTCTCATTAATATACCTCTTTGAGTATGAATTTTCGAGGCTTCTTCAATGGTTCCAGTTCTGGCCTTACTTTAAGCTAATGATCATCTTCTGGCTCATCATGCCAGACTTTGGACGAGCTTCTTATGCCTATAATAACCTTATTCGCACTTGCATCTCCTTAAATCCACAAGCAATTATATGTAGGTTAAATAACTGGAGGAAGTTTTTTGTCAGGAAAGATGACTTTTTACAGCAAGTAGAGAGATGTGTAAATGAGAATGGAACTGAAGCCATAGAGAAACTCATTGCTAGCAAGAACACAAACCTATTGAAGAACACAACTTATAAACCTGATGCAGAAGCAACAAATGCAATTAGAGCTACCGATAATAAAGAAATGCAACAGACAAATGAGAAAAGGCTCCAAATACAACACAAAGCTGTCAAGGATTTAGAGGTGATCGAGAAAAAAGAAATTCCTGCTAGCAAGCAAGATATTCATGTTGTGCCTAACCTTGTGCCAATGCCAAGTCAGAGTGCTTCACCAGCCATGGTGGAAGCTAAAGGAATAGTGGGGAACGACACAGCTGGTGGAGAGCTTCCTCAGAGTTCTACACATAAGGAAGTGCAGAAAGAGTGGACTTGTGCTTTATGTCATGTAACAACAACGAGCAAGAAAACCTTGAAGATCCACCTGCAAGGGAGGAATCACAGGGCTAACGTGGAAGCTCTGAAGGCAAAAAATCAACCTGTTCCACAGAAGCTTAAAAGTGATCAGTCCAAAGAGAAACTGAAACAGAAGAACATTATCAATCAGATAAATTCCAAGACCAAGAATGGAGAGAGTATAGTTAACAGCGGGTTGAAGGGAGGAAAAGAAGTCATGGATCACAAGGTGCAAAAACTGCAACAGAAACCATATGAACCTGCTGGGATGAGTCATTCCAAATTTAGATGTAAAGTCTGTAATGTCGATTGCCCTTGCAAGATTACCTTGGCCTCTCACAAGCAAGGGAGGAAACACAGGGCTAACAAGGAAGCTCTGAAGGCAAAGAATCAACCTGTTCCCCAGAAGCTGAAAAGTGATCAGTCCAAAGAGAAACTGAAACAGAAGAACATTATCAATCAGATAAATTCCAAGACCAAGCAAGAATGGAGAGAGTATAGTTAA 1308 0.4098 MASLWFLKLALKCLDHFAWPVLALGYPLCASVQAIETDSYKETRDLISYWILLSLIYLFEYEFSRLLQWFQFWPYFKLMIIFWLIMPDFGRASYAYNNLIRTCISLNPQAIICRLNNWRKFFVRKDDFLQQVERCVNENGTEAIEKLIASKNTNLLKNTTYKPDAEATNAIRATDNKEMQQTNEKRLQIQHKAVKDLEVIEKKEIPASKQDIHVVPNLVPMPSQSASPAMVEAKGIVGNDTAGGELPQSSTHKEVQKEWTCALCHVTTTSKKTLKIHLQGRNHRANVEALKAKNQPVPQKLKSDQSKEKLKQKNIINQINSKTKNGESIVNSGLKGGKEVMDHKVQKLQQKPYEPAGMSHSKFRCKVCNVDCPCKITLASHKQGRKHRANKEALKAKNQPVPQKLKSDQSKEKLKQKNIINQINSKTKQEWREYS 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01685 435 SMART c2h2final6 259 283 IPR013087 -
Pumo6g01685 435 SMART c2h2final6 363 387 IPR013087 -
Pumo6g01685 435 SUPERFAMILY beta-beta-alpha zinc fingers 250 295 IPR036236 -
Pumo6g01685 435 SUPERFAMILY beta-beta-alpha zinc fingers 360 399 IPR036236 -
Pumo6g01685 435 SMART ZnF_U1_5 256 290 IPR003604 GO:0003676|GO:0008270
Pumo6g01685 435 SMART ZnF_U1_5 360 394 IPR003604 GO:0003676|GO:0008270
Pumo6g01685 435 ProSitePatterns Zinc finger C2H2 type domain signature. 365 387 IPR013087 -
Pumo6g01685 435 Gene3D Classic Zinc Finger 245 289 - -
Pumo6g01685 435 PANTHER HVA22-LIKE PROTEINS 10 168 IPR004345 -
Pumo6g01685 435 Gene3D Classic Zinc Finger 344 399 - -
Pumo6g01685 435 MobiDBLite consensus disorder prediction 382 435 - -
Pumo6g01685 435 Pfam Zinc-finger of C2H2 type 363 387 - -
Pumo6g01685 435 Pfam Zinc-finger of C2H2 type 259 283 - -
Pumo6g01685 435 Pfam TB2/DP1, HVA22 family 27 102 IPR004345 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01685 Pumo-Chr6 25242866 25246960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01685 259 409 C2H2 Transcription Factor Family AT2G19380 26.490 1.67e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo6g01685 TB2_DP1_HVA22 6.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01685 - - gmx:100812073 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01685 6 25242866 25246960 Pumo6g01685 6 25242866 25246960 ECH