LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo6g01680	ATGACCTTCTTTCTGGCACACCCAAACTTTCCAGAACCTGTTCCAAGAGATGGATATGGTCTTGGTCTTGCGAGCCGCGATCAACTGAGGAATCCAAATTTCACAAAGCAATATCCATTTGTAGCAGTGGAATTTGATACCTTTGTTAATGACTGGGATCCTAATTATCATCATGTGGGTATCGATGTTAATTCTGTTGTCGTTTCTGACACTACACAATGGGGCACTAGCATGGATCAGAGAGGATATGATGCTGATATTAGTTATGATTCTGCTTCAAACAAATTAAGTGTCACCGTCACTGGGTATAAGGATAACGACACAATTGAACATAACTTATCCTCTGAGGTAAATCTGAGAGATATCTTACCTGATTGGGTTCAATTTGGCTTCTCTGCAGCAACAGGATCCTATTACGAGGAACATACTCTTAGCTCGTGGTCCTTCAACTCTAGTTTAGACTTCGAACCCGACAAGGGTGGAAGCAAAACAGGGTTGGTGATAGGGCTAAGCGTTGGACTTAGTGCAGCTGTTTTAATTGTTATTTTGGGGGTAGCTTGCCTTGTGAGATGGATGCTGAGGAATAGAGGTATGGAGGATGTCGCACTTTTTAAACATGCTATGGACAATGATTTCGAAAGAATGTCCCTACCCAAGAAGTTTTCGTATGAAGAACTTGCCAGAGCAACTAATAACTTTGCAATAGAAAACAAAATTGGAGAGGGAGGATTTGGGGCAGTCTACAAAGGATTTATAAGAGAGTTGAACACCCATGTTGCCATTAAGAAGGTATCTCGTGGATCTAGACAAGGGGTGAAAGAGTATGCATCTGAAGTAAAGATCATTAGTCAACTGAGGCATAAAAATTTGGTTCAACTCTTTGGGTGGTGCCATGAACACAATGACCTGCTGCTGATTTATGAGTTCATGGAAAATGGAAGCTTGGATTCTTATCTGTTTAAAGGAAAAGGCCTTCTGACATGGAAAGTGAGATATGATATTGCTAGAGGTCTGGCCTCAGCATTATTATACCTGCATGAAGAGTGGGAAGAATGTGTGCTTCATAGAGACATAAAATCCAGCAATGTCATGTTGGATTCTAATTTTGATGCAAAGCTTGGTGATTTTGGTTTAGCCAGGCTATTGGATCATGCAATAGGATCAAAAACAACTGTTTTAGCAGGAACAATTGGATATTTGCCTCCTGAAGCTGTCACAAGAGGCAAGGCTAGTAGGGAGTCTGATGTATACAGTTTTGGGGTTGCTGCTTTGGAGATAGCCTGTGGTAGAAAGGCAATTGAACCTAATCTGAATGAAGAACAGATCTGTTTGGTGGATTGGGTTTGGGAACTCCATGGCATGGGTGCTCTCTTTAAAGCATCTGATCCAAGCTTATATGGACACTTTGATGAGAAGGAAATGGAGAGGTTAATGATAGTTAGCCTTTGGTGCACTCACACAGATTTCCTTCTGAGGCCTACAATTAGGCAAGTTGTTCAAGTGCTTAATTTTGAAGCTCCACTTCCCACTCTCACACCACGGGGGCAGTCCTCTACCTATAATACATCTTTCAGCTCCATGCCCTCTATGACTTCTGCTTTTGCAAATAACCAACCTGTCTCTTCAACTTCAAGCAGTAGCTTATTCATTGGATCCTCACAATCGAACTCAACTTTTGAAGTCATTTCTCCAGCAGCTGCACATTTACATACCTACTAA	1719	0.4154	MTFFLAHPNFPEPVPRDGYGLGLASRDQLRNPNFTKQYPFVAVEFDTFVNDWDPNYHHVGIDVNSVVVSDTTQWGTSMDQRGYDADISYDSASNKLSVTVTGYKDNDTIEHNLSSEVNLRDILPDWVQFGFSAATGSYYEEHTLSSWSFNSSLDFEPDKGGSKTGLVIGLSVGLSAAVLIVILGVACLVRWMLRNRGMEDVALFKHAMDNDFERMSLPKKFSYEELARATNNFAIENKIGEGGFGAVYKGFIRELNTHVAIKKVSRGSRQGVKEYASEVKIISQLRHKNLVQLFGWCHEHNDLLLIYEFMENGSLDSYLFKGKGLLTWKVRYDIARGLASALLYLHEEWEECVLHRDIKSSNVMLDSNFDAKLGDFGLARLLDHAIGSKTTVLAGTIGYLPPEAVTRGKASRESDVYSFGVAALEIACGRKAIEPNLNEEQICLVDWVWELHGMGALFKASDPSLYGHFDEKEMERLMIVSLWCTHTDFLLRPTIRQVVQVLNFEAPLPTLTPRGQSSTYNTSFSSMPSMTSAFANNQPVSSTSSSSLFIGSSQSNSTFEVISPAAAHLHTY	572

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo6g01680	572	CDD	lectin_legume_LecRK_Arcelin_ConA	1	153	IPR001220	GO:0030246
	Pumo6g01680	572	ProSiteProfiles	Protein kinase domain profile.	233	511	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo6g01680	572	SUPERFAMILY	Concanavalin A-like lectins/glucanases	1	153	IPR013320	-
	Pumo6g01680	572	ProSitePatterns	Legume lectins alpha-chain signature.	123	132	IPR000985	-
	Pumo6g01680	572	ProSitePatterns	Protein kinases ATP-binding region signature.	239	263	IPR017441	GO:0005524
	Pumo6g01680	572	Pfam	Protein kinase domain	234	499	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo6g01680	572	Gene3D	Transferase(Phosphotransferase) domain 1	310	522	-	-
	Pumo6g01680	572	FunFam	L-type lectin-domain containing receptor kinase IX.1	218	309	-	-
	Pumo6g01680	572	Pfam	Legume lectin domain	1	159	IPR001220	GO:0030246
	Pumo6g01680	572	ProSitePatterns	Legume lectins beta-chain signature.	41	47	IPR019825	-
	Pumo6g01680	572	Gene3D	Phosphorylase Kinase; domain 1	218	309	-	-
	Pumo6g01680	572	FunFam	Lectin-domain containing receptor kinase A4.3	310	522	-	-
	Pumo6g01680	572	PANTHER	-	2	509	-	-
	Pumo6g01680	572	Gene3D	-	1	162	-	-
	Pumo6g01680	572	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	353	365	IPR008271	GO:0004672\|GO:0006468
	Pumo6g01680	572	SMART	serkin_6	233	502	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo6g01680	572	CDD	STKc_IRAK	239	503	-	-
	Pumo6g01680	572	SUPERFAMILY	Protein kinase-like (PK-like)	217	525	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo6g01680	Pumo-Chr6	25072018	25074236	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo6g01680	3	521	Receptor kinase-like Gene Family	AT5G10530	49.529	8.15e-160	469

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Pumo6g01680		Pkinase	2.2e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo6g01680	-		-	gmx:100783420	934.48