Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01667 ATGGATAACAGCCTGAACAATCGGAGCCACAACGGGGAAGAGCCGCCACCGCCGCCACCGCCGCCGCCGCCGCCGCCGCCTCCCATGCAAGTCGACGGCTTCCAACCCTTCCATTACGCTAATGGTTCCGATGAAGGGGAAGAACCTGCTCCTGCTCCACTAGCCAATGCTATGCACGCCAGAACCAGCGAACTCACTATTTCCTTCGAAGGCGAGGTCTATGTTTTCCCTGCTGTTACACCGGAAAAGGTGCAGGCTGTATTATTACTCTTGGGAGCGCAGGAGATGCCAATTAGTGCCCCCACTGCTGACATTTTGTTGCAGCAAAACTGTCAGGACATTAGGGAAATAAATGATCCTTCCCAAAGTTCAAAGCTTTCACGAAGATTTGCATCACTTGTTAGGTTTCGTGAAAAACGAAAAGAGAGATGTTTTGAGAAGAAAATTCGGTACTCTTGCCGTAAAGAGGTTGCCCAGAGGATGCATCGTAAGAATGGACAGTTTGCATCATTGAAGGAAGACTACAAATCTCCTGCTGAAAATTGGGATTCAAGTAATGGTACTCCTTGCCCAGAATCTACTGAACGTAGATGCCAGCATTGTGGAATTAGTGAGAAGTCTACTCCAGCTATGCGTCGAGGACCAGCAGGTCCAAGATCTCTCTGCAATGCTTGTGGGCTTATGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAGCAGGAAGGATTGCTTTTGAACAAAATGAACTGGATACTTCAGCTGATATAAAGCCTTCAACAACAGGAGCAGAACATTCTTGTGCTAAGCAGGACAAGGAGGGAAGCCCCGAGGAAACTAAGCCTGTGCAAATGGATTCCAGACGGTCACCTGAGAAGACAAATGAGCAGTTTATTATCAGAACTGCTGAATCAGTTACTGACAACTTGTCTATCCAAGTGGAGAGTCATGCTCTTGGTCTGCATGAGCAGGATACTCTTGAGGATCTTGCTGATGCTTCCGGGACCGAATTTGAGATTCCTGCAGGTTTTGATGAGCAGGTTGATATTGATGATTCCAACATGAGGACTTACTGGCTGTGA 1083 0.4774 MDNSLNNRSHNGEEPPPPPPPPPPPPPPMQVDGFQPFHYANGSDEGEEPAPAPLANAMHARTSELTISFEGEVYVFPAVTPEKVQAVLLLLGAQEMPISAPTADILLQQNCQDIREINDPSQSSKLSRRFASLVRFREKRKERCFEKKIRYSCRKEVAQRMHRKNGQFASLKEDYKSPAENWDSSNGTPCPESTERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKAGRIAFEQNELDTSADIKPSTTGAEHSCAKQDKEGSPEETKPVQMDSRRSPEKTNEQFIIRTAESVTDNLSIQVESHALGLHEQDTLEDLADASGTEFEIPAGFDEQVDIDDSNMRTYWL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01667 360 SMART tify_2 58 93 IPR010399 -
Pumo6g01667 360 MobiDBLite consensus disorder prediction 1 52 - -
Pumo6g01667 360 Pfam GATA zinc finger 198 234 IPR000679 GO:0006355|GO:0043565
Pumo6g01667 360 MobiDBLite consensus disorder prediction 12 32 - -
Pumo6g01667 360 ProSiteProfiles Tify domain profile. 58 93 IPR010399 -
Pumo6g01667 360 SMART GATA_3 192 245 IPR000679 GO:0006355|GO:0043565
Pumo6g01667 360 Gene3D - 191 250 IPR013088 GO:0006355|GO:0008270
Pumo6g01667 360 Pfam tify domain 61 92 IPR010399 -
Pumo6g01667 360 MobiDBLite consensus disorder prediction 255 295 - -
Pumo6g01667 360 SUPERFAMILY Formin homology 2 domain (FH2 domain) 18 27 - -
Pumo6g01667 360 PANTHER GATA TRANSCRIPTION FACTOR 28 43 339 IPR045280 GO:0006355
Pumo6g01667 360 MobiDBLite consensus disorder prediction 267 295 - -
Pumo6g01667 360 ProSiteProfiles CCT domain profile. 129 171 IPR010402 GO:0005515
Pumo6g01667 360 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 246 - -
Pumo6g01667 360 CDD ZnF_GATA 197 240 IPR000679 GO:0006355|GO:0043565
Pumo6g01667 360 ProSitePatterns GATA-type zinc finger domain. 198 225 IPR000679 GO:0006355|GO:0043565
Pumo6g01667 360 Pfam CCT motif 129 170 IPR010402 GO:0005515
Pumo6g01667 360 ProSiteProfiles GATA-type zinc finger domain profile. 192 249 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01667 Pumo-Chr6 24633038 24639076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01667 64 241 Tify Gene Family AT1G51600 57.527 3.65e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo6g01667 CCT 6.7e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01667 - - gmx:102669848 626.32