Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01653 ATGACTAGAAAGAGGATACAGATCAAGAAAATTGACAACATCAGTTCGAGGCAGGTGACTTTCTCCAAGAGAAGGAAAGGGCTTTTCAAGAAGGCTCAGGAGTTGTCAACCCTTTGTGATGCAGACATAGCTCTCATAGTCTTTTCTGCAACTAGCAAGCTCTTTGAGTATGCCAGTTCAAGCATGCAACAAGTAATTGAAAGGCGCGATCGCCATTCAGCAATGCATAGATTGGATCGCCCCTCTATTGAGCTGCAGATTGAGAGTGACTCCAATGACATCCTGCGCAAGAAAGTGGAAGATAAGAATCGTGAACTGAGGATGAAAAAGTTTTGCAAGAGATCAGCACCCTTAGGAGAAAGGGTAATCTTTATGTGTAGAAAGGATACTCACATTCCTCGACGAAGGGCACATGCAGGGTAG 423 0.4421 MTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATSKLFEYASSSMQQVIERRDRHSAMHRLDRPSIELQIESDSNDILRKKVEDKNRELRMKKFCKRSAPLGERVIFMCRKDTHIPRRRAHAG 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01653 140 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pumo6g01653 140 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pumo6g01653 140 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 90 - -
Pumo6g01653 140 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo6g01653 140 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Pumo6g01653 140 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Pumo6g01653 140 FunFam Transcription factor, MADS-box 13 82 - -
Pumo6g01653 140 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Pumo6g01653 140 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo6g01653 140 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo6g01653 140 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo6g01653 140 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01653 Pumo-Chr6 24436509 24450665 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01653 1 107 MADS-box Gene Family AT2G22540 57.798 1.30e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo6g01653 SRF-TF 8.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01653 - - gmx:100815814 196.438