Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01649 ATGACTAGAAAGAGGATACAGATCAAGAAAATTGACAACATCAGTTCGAGGCAGGTGACTTTCTCCAAGAGAAGGAAAGGGCTTTTCAAGAAGGCTCAGGAGTTGTCAACCCTTTGTGATGCAGACATAGCTCTCATAGTCTTTTCTGCAACTAGCAAGCTCTTTGAGTATGCCAGTTCAAGCATGCAACAAGTAATTGAAAGGCGCGATCGCCATTCAGCAATGCATAGATTGGATCGCCCCTCTATTGAGCTGCAGATTGAGAGTGACTCCAATGACATCCTGCGCAAGAAAGTGGAAGATAAGAATCGTGAACTGAGGTATACATGCACTGCGCAGAGCTAG 345 0.4493 MTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATSKLFEYASSSMQQVIERRDRHSAMHRLDRPSIELQIESDSNDILRKKVEDKNRELRYTCTAQS 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01649 114 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pumo6g01649 114 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pumo6g01649 114 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo6g01649 114 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Pumo6g01649 114 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Pumo6g01649 114 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Pumo6g01649 114 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo6g01649 114 FunFam Transcription factor, MADS-box 13 82 - -
Pumo6g01649 114 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo6g01649 114 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo6g01649 114 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo6g01649 114 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01649 Pumo-Chr6 24277152 24283595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01649 1 107 MADS-box Gene Family AT2G22540 57.798 1.43e-39 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo6g01649 SRF-TF 5.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01649 - - gmx:100815814 196.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01649 6 24277152 24283595 Pumo2g01028 2 15369327 15388394 PCT