Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01639 ATGGGGCTGCATCACAGAAAGTTGTTGTCATCATCACCACCAGACTGTTTAGAAGCCTGTGCTGGAAAGAAATCACCACCACTCTGTACCTGTGATTCTTCTAATTATTACCCTCCAACTCCTCCTATCTACTCAGTTGATGATGTGAGCCAAAGTTCCAGCAAACACATCAAAACCACATACTTGATCATAAGCTTCTCTATCGTGGCAGCCGCTTTCATCGTCCTCTGCTGCTACGCCATTTATGTCAAGTTTTTCTCTCCTCGGAACAGGTCAATGAGGAGAACCCTGTCACGGCCACAGACAGAAGAAGATTTCTTGGACGAGGAAGAACAACATGGTACCGTGGTTGACCACCCCATCTGGTACATCCGCACCACCGGTCTCCAACAAGCGGTGATCGGAGCCATCACCGTTTGCAAGTATAAAAAAGATGAAGGGTTGATTGAAGGGACTGAATGTTCTGTTTGTTTGAGCGAGTTTCAAGAGGACGAGAGTCTCAGGCTCTTGCCAAAGTGTAACCACGCTTTTCACTTGCCTTGCATTGACACGTGGCTTAGATCACACACCAATTGCCCCCTGTGCCGTGCTCCCATTGTCACTGACCCCACAAGGGTTCCTTCAATGGACCCGATTGCGTTTGCTTCAACTTCTTTTGTGGAGGAGGTTTTGGAAAATGGAGTTGAAAATACTCAAACTCAAAGTAGTGATGATTTGTTGAGGAATGAAGAAGAGGAAAGAGTGCAAGAAGGTGAAGTTTGTGAGAATGAGAACTTGGCTTCAGAGGTGGTGACTGTGCAGCAGCCAAGAAGATCAGTGTCTCTGGATTCTTCTTCTGCTGCTAAGATCAGTCTTGCTCTTGCAACTGTTGTTCAATCAGGGGAATCTCATGGGAATCATTCAAAGAGGGTTGTTGGGAATGGGAATTTGGCAACTGCTACAAAAGGTGGTTCTAGTTCTTCTTCTTCTTCCTATAGTTCGGTGAAGAGGTCACGATCATTCAATGCCAAACACTTGGTTTCATGGTATGGCCGCAGTCAGAGAAAGCCAAATGCTCCTTTGAGAAGCTTCTGA 1074 0.4609 MGLHHRKLLSSSPPDCLEACAGKKSPPLCTCDSSNYYPPTPPIYSVDDVSQSSSKHIKTTYLIISFSIVAAAFIVLCCYAIYVKFFSPRNRSMRRTLSRPQTEEDFLDEEEQHGTVVDHPIWYIRTTGLQQAVIGAITVCKYKKDEGLIEGTECSVCLSEFQEDESLRLLPKCNHAFHLPCIDTWLRSHTNCPLCRAPIVTDPTRVPSMDPIAFASTSFVEEVLENGVENTQTQSSDDLLRNEEEERVQEGEVCENENLASEVVTVQQPRRSVSLDSSSAAKISLALATVVQSGESHGNHSKRVVGNGNLATATKGGSSSSSSSYSSVKRSRSFNAKHLVSWYGRSQRKPNAPLRSF 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01639 357 SMART ring_2 154 195 IPR001841 -
Pumo6g01639 357 Pfam Ring finger domain 153 196 IPR001841 -
Pumo6g01639 357 CDD RING-H2_EL5-like 153 196 - -
Pumo6g01639 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 203 IPR013083 -
Pumo6g01639 357 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 50 204 IPR044675 -
Pumo6g01639 357 SUPERFAMILY RING/U-box 145 203 - -
Pumo6g01639 357 MobiDBLite consensus disorder prediction 294 328 - -
Pumo6g01639 357 FunFam RING-H2 finger protein ATL54 129 202 - -
Pumo6g01639 357 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01639 Pumo-Chr6 24034126 24035819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01639 50 257 C3H Transcription Factor Family AT1G72220 45.291 4.57e-49 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01639 - - gmx:100819010 497.278