Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01618 ATGGATAGTCTTTGTTGCTTCAGCTCTGTCAGTCAGGTGGTTGGAGGGCGTTCTTCATGTAACTCTGGCAAAGGCAAGAGCAGTCAGTCCTCAGTCAAGTATGGCTATAGCCTAGTTAAAGGGAAAGCAAACCACCCGATGGAGGACTATCACGTAGCAAAATTTGTTCAGTTCGAAGGGCGAGAGCTTGGGCTTTTTGCTATATATGATGGACACCTGGGTGACAGTGTACCAGCCTATTTACAAAAGCATCTGTTTTCTAACATCTTGAAGGAAGAGGACTTCTGGAATGATCCATTCATGTCCATTTCTAATGCGTATGAGACAACAGATCAGGCAATTCTTTCTCACAGTCCTGATTTGGGGCGAGGAGGATCAACTGCAGTGACTGCAATTCTCATAAATAATCAGAAATTATGGGTAGCCAATGTTGGAGATTCACGAGCTGTTGTGTCAAGGGGAGGGGTGGCTGGACAGATGACAACTGATCATGAACCCAATACTGAGCGGGGCAGCATTGAGACCAGAGGTGGCTTTGTCTCAAACATGCCAGGAGATGTAGCAAGAGTAAATGGGCAGCTAGCAGTTTCTCGAGCCTTTGGAGACAAAAACCTCAAAACACACTTGCGATCTGATCCTGACATTCAGTATACTGATATTACCCCAGATGTTGAGCTTTTGATACTTGCTAGTGATGGTCTATGGAAGGTAATGGCAAATCAAGAAGCTGTTGATATTGCAATAAGGATAAAGGATCCACAAAAGGCAGCGAAACAACTAGCCACTGAGGCATTGAACAGAGACAGTAAGGATGATATTTCCTGCATTGTAGTTCGTTTCAAGGGTTGA 849 0.4452 MDSLCCFSSVSQVVGGRSSCNSGKGKSSQSSVKYGYSLVKGKANHPMEDYHVAKFVQFEGRELGLFAIYDGHLGDSVPAYLQKHLFSNILKEEDFWNDPFMSISNAYETTDQAILSHSPDLGRGGSTAVTAILINNQKLWVANVGDSRAVVSRGGVAGQMTTDHEPNTERGSIETRGGFVSNMPGDVARVNGQLAVSRAFGDKNLKTHLRSDPDIQYTDITPDVELLILASDGLWKVMANQEAVDIAIRIKDPQKAAKQLATEALNRDSKDDISCIVVRFKG 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01618 282 CDD PP2Cc 32 280 IPR001932 -
Pumo6g01618 282 ProSiteProfiles PPM-type phosphatase domain profile. 33 280 IPR001932 -
Pumo6g01618 282 FunFam Probable protein phosphatase 2C 39 24 281 - -
Pumo6g01618 282 SUPERFAMILY PP2C-like 28 281 IPR036457 -
Pumo6g01618 282 Gene3D - 17 282 IPR036457 -
Pumo6g01618 282 SMART PP2C_SIG_2 44 280 IPR001932 -
Pumo6g01618 282 SMART PP2C_4 29 278 IPR001932 -
Pumo6g01618 282 PANTHER PROTEIN PHOSPHATASE 28 280 IPR015655 GO:0004722|GO:0006470
Pumo6g01618 282 Pfam Protein phosphatase 2C 42 273 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01618 Pumo-Chr6 23583438 23592227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01618 1 281 PP2C-type Phosphatase Gene Family AT1G22280 70.732 4.08e-147 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01618 K17506 - gmx:100776795 525.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01618 6 23583438 23592227 Pumo6g01618 6 23583438 23592227 ECH
Pumo6g01618 6 23583438 23592227 Pumo2g01089 2 15948726 15950787 PCT