Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01616 ATGAAACGTGGATTATTGGATGGAGAGGAGAGCCTCAAGAAGGTTGATAGTTTCAATAGGTGGATCACTAAAGAACTTGCAGGTGTGGATGATCTGCATATGCAGTCTTCCCCTGGTATTTCATGGAGCACAGATGAATGTGGGGATGTGATAGATGATACCTCATTGAACCTGTCCCTGTCTCAAGACCAGCTGTTTAGCATTAACGATTTTTCACCTAAATGGTCTTATGCTGAATCAGAAATTGAGGTGTTGATTGTTGGAACATTTTTGAAGAGTCAACCTGTGGTGGCAAAATGTAACTGGTCCTGTATGTTTGGGGAAGTGGAGGTTCCTGCTGAGGTTTTAGCTAATGGAATTCTGTGCTGTCGAGCTCCACCTCATAAGATTGGACGGGTTCCCTTCTATGTAACATGTTCCAATAGGTTTGCTTGTAGTGAAGTTCGGGAATTTGAGTACAGAGAGGGCTTTGATAGAAATATAAATTTTGCAGATTTTTTTAACAGTTCAATTGAAATTGAGCTTTATTTGCGACTGGTGGGGTTACTGTCTTTAAACTCACTACACACTTCAAATCAAGTGTTTGAGGACGATATGGAGAAACGAAACTTAATATTCAAGCTTATTTCACTGAAAGAGGAAGAAGAATATTCAAGTAAGGAAGAGACAACTGTAGAGATGGATATATCAAAACACAAGTTGAAGGATCATATGTTTCACAAGCAGGTTAAAGAGAAGTTGTACTCATGGCTTCTTCACAAAGTTACTGAAACTGGTAAAGGGCCTCTTGTATTAGGTGAAGAGGGGCAAGGTGCGTTACACTTAGTTGCTGCTCTTGGTTATGGTTGGGCCATAAATCTAATCGTAACTGCTGGAGTCAGTATCAACTTCCGCGATGTGAATGGATGGACAGCTCTACACTGGGCTGCATTCTGTGGCCGAGAGCGAACAGTTGCTGTCCTTGTCTCCATGGGTGCAGCCACTGGAGCATTGACAGATCCAAGTCCAGAATTTCCTTCAGGTAGAACACCTGCAGATCTTGCTTCTAGCAACGGCCACAAAGGAATTTCTGGTTTTCTTGCAGAGTCATTATTAACTAGCCACCTCGAATCACTCAAAATGGAAGAAAATAAAGATGGTAGGAAAGAAACTTCAGGAATGAAAGTAGTGCAAACAGTTTCAGAGCGAACTGCGACACCTGTGCTTTATGGTGATATGCCAGATGCTATCTGCCTTAAGGATTCTCTCAACGCTGTCCGTAATGCTACACAAGCTGCTGATCGTATACATCAAGTATTTAGAATGCAGTCATTTCAGAGGAAGCAGTTAGCTCAGTATGAAGATGATGAATTTGGATTGTCAGATCAACAAGCTCTTTCTCTCCTAGCTTCTAAGACGCGCAAATCTGGACAGGGAGAGGGTTTAGCCAATGCTGCTGCAATACAAATACAGAAAAAGTTCCGTGGTTGGAAGAAGAGAAAAGAATTCTTGATCATTCGCCAAAGAATTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTCAGAAAGCAGTATAAACCAATCATTTGGTCCGTGGGAATCCTGGAAAAGGTCATATTACGCTGGAGACGCAAGGGCAGCGGTTTACGTGGATTCCGACCAGCCGTCCCGAACAAGGTCCCTGAACAACCAAGCGAATCTCCGAAAGAGGATGATTATGATTTTCTCAAGGAAGGAAGGAAACAAAGCGAAACAAGGTTCCAAAAGGCACTTTCACGGGTGAAGTCCATGGTTCAGTATCCAGAGGCACGGGCTCAATACCGGCGGGTGCTAAATGTAGTCGAGGACTTCCGTCAAACCAAGGGAGGTAATTTGAATTTGATAAATTCAGAAGAGACAGTTGATGGTGTGGAGGATTTGATTGATATTGACATGCTTTTAGATGATGAAAATTTCTTGCCTATAGCATTCGATTGA 1959 0.4257 MKRGLLDGEESLKKVDSFNRWITKELAGVDDLHMQSSPGISWSTDECGDVIDDTSLNLSLSQDQLFSINDFSPKWSYAESEIEVLIVGTFLKSQPVVAKCNWSCMFGEVEVPAEVLANGILCCRAPPHKIGRVPFYVTCSNRFACSEVREFEYREGFDRNINFADFFNSSIEIELYLRLVGLLSLNSLHTSNQVFEDDMEKRNLIFKLISLKEEEEYSSKEETTVEMDISKHKLKDHMFHKQVKEKLYSWLLHKVTETGKGPLVLGEEGQGALHLVAALGYGWAINLIVTAGVSINFRDVNGWTALHWAAFCGRERTVAVLVSMGAATGALTDPSPEFPSGRTPADLASSNGHKGISGFLAESLLTSHLESLKMEENKDGRKETSGMKVVQTVSERTATPVLYGDMPDAICLKDSLNAVRNATQAADRIHQVFRMQSFQRKQLAQYEDDEFGLSDQQALSLLASKTRKSGQGEGLANAAAIQIQKKFRGWKKRKEFLIIRQRIVKIQAHVRGHQVRKQYKPIIWSVGILEKVILRWRRKGSGLRGFRPAVPNKVPEQPSESPKEDDYDFLKEGRKQSETRFQKALSRVKSMVQYPEARAQYRRVLNVVEDFRQTKGGNLNLINSEETVDGVEDLIDIDMLLDDENFLPIAFD 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01616 652 ProSiteProfiles IQ motif profile. 499 523 IPR000048 GO:0005515
Pumo6g01616 652 ProSiteProfiles Ankyrin repeat profile. 301 333 IPR002110 GO:0005515
Pumo6g01616 652 ProSiteProfiles IQ motif profile. 476 505 IPR000048 GO:0005515
Pumo6g01616 652 FunFam Calmodulin-binding transcription activator 2 61 157 - -
Pumo6g01616 652 Gene3D - 476 522 - -
Pumo6g01616 652 Pfam Ankyrin repeats (3 copies) 273 362 IPR002110 GO:0005515
Pumo6g01616 652 SUPERFAMILY Ankyrin repeat 261 362 IPR036770 -
Pumo6g01616 652 Pfam IPT/TIG domain 68 153 IPR002909 -
Pumo6g01616 652 SMART iq_5 498 520 IPR000048 GO:0005515
Pumo6g01616 652 SMART iq_5 475 497 IPR000048 GO:0005515
Pumo6g01616 652 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 476 526 IPR027417 -
Pumo6g01616 652 SMART ANK_2a 340 369 IPR002110 GO:0005515
Pumo6g01616 652 SMART ANK_2a 268 297 IPR002110 GO:0005515
Pumo6g01616 652 SMART ANK_2a 301 330 IPR002110 GO:0005515
Pumo6g01616 652 ProSiteProfiles Ankyrin repeat region circular profile. 301 326 - -
Pumo6g01616 652 Pfam IQ calmodulin-binding motif 478 496 IPR000048 GO:0005515
Pumo6g01616 652 Pfam IQ calmodulin-binding motif 501 520 IPR000048 GO:0005515
Pumo6g01616 652 FunFam Calmodulin-binding transcription activator 2 475 523 - -
Pumo6g01616 652 SUPERFAMILY E set domains 68 154 IPR014756 -
Pumo6g01616 652 MobiDBLite consensus disorder prediction 547 567 - -
Pumo6g01616 652 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 7 614 - -
Pumo6g01616 652 ProSiteProfiles Ankyrin repeat profile. 268 300 IPR002110 GO:0005515
Pumo6g01616 652 Gene3D Immunoglobulins 61 156 IPR013783 -
Pumo6g01616 652 Gene3D - 200 363 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01616 Pumo-Chr6 23552482 23557409 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01616 1 633 CAMTA Transcription Factor Family AT5G64220 59.248 0.0 779
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01616 K21596 - gmx:100797717 1180.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01616 6 23552482 23557409 Pumo2g01090 2 15957259 15967571 PCT