Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01611 ATGCCTCGTCGCTTCCTACAACAACAACAGCAACTGCTGCCGCATTCCGTGTTCTTTCGCTTCCGCGCCGTCGCCGTCCTCGCTCCGCCATTTCCGCGGACTGCTCCCGCGAACACCGTGCCGTGCGCGCTGCATTTCGAGCTCCGCCGCTTGCCTTTGCTTCCTCTGCCGGCGGATGGACATGGCGGCGCTGGAACCGGCGACGGTGGCGGAGGTGGCGGTGGTTCTGGCGGTGAGTCTGGAGATGCTAATCTCAAATTGGTTGGAGACGCGTCTCAGGATCTTTCGGCACTTTCTCCTGATGTTATCATACTCGATGTTTCCGGAATGGTGTGCGGGGGATGTGCAGCGACTGTGAAAAGGATACTAGAAAGTCGACCACAGGTGTCATCGGCTAGTGTAAATTTAACAACAGAGACAGCAATAGTTTGGCCTATATCTGAAGCAAAAAATGCACCAAATTGGCAAAAGGAATTAGGAGAGGCACTTGCAGAGCATTTGACTAGTTGTGGTTATAATTCTAGCCTTCGAGACTCAACAAGAGACAACTTCCTCCAAATTTTTGAAAGGAAGATGGAGGAAAGACATAGACAATTAAGAGAAAGTGGTCGTGAGCTAGCTGTTTCTTGGGCTCTATGTGCTGTCTGTCTTGTTGGCCATTTCTCTCATTTCTTTGCAGCAAAGGCACCATGGATCCACGTATTTCATTCCATTGGGTTTCATCTTTCCTTGTCTTTGTTTACGTTGCTTGGTCCTGGCCGCCAACTTATCCTTGATGGCTTAAAAAGCCTTCTTAAAAGGACGCCAAACATGAACACCTTAGTTGGTCTCGGGGCTTTATCATCATTTACAGTCAGTTCATTTGCTACCTTGCTGCCAAATTTGGGTTGGAAGGCTTTCTTTGAGGAACCAATTATGCTAATTGCATTTGTCTTGTTAGGAAGGAATCTTGAACAGAGAGCTAAAATTAAAGCAACCAGTGATATGACAGGACTTCTTAGTTTATTGCCACCAAAAGCTCGCCTTCTTGTGAACAATGGGGAAACAGAGGTTGGCTCGGTTGTTGAAGTTCCTTCTGACAGTCTTTCTGTTGGAGACCAAATTATTGTATTACCTGGAGATCGTATTCCAGCTGATGGAGTTGTGAGATCTGGTAGAAGCACTATAGATGAATCAAGTTTCACTGGTGAACCACTGCCTGTTACAAAAGTACCTGGGAGTGAGGTAGCAGCTGGGAGTATAAATCTTAATGGAACTCTTACATTGGAAGTGCAGAGACCAGGTGGTGAGACTGCTATGGCAGACATTGTTCGTCTAGTTGAAGAGGCACAAAGTAGGGAAGCTCCTGTACAACGGTTGGCTGACAAGGTAGCTGGACAGTTCACTTATGGAGTGATGACAGCCTCTGCTGCCACATTCACATTCTGGAGTCTGTATGGCACACGCATTTTACCTCCTGCTTTATATCAAGGAAGTGCTGTTTCACTGGCTTTGCAGCTTGCTTGCAGTGTTCTGGTTGTTGCTTGTCCATGTGCACTTGGGTTAGCCACACCTACTGCAGTGCTGGTTGGAACATCTTTGGGAGCTAAAAGAGGATTACTTCTGCGTGGTGGAAACATTCTAGAGAAGTTTGCCATGGTAAACACTGTTGTGTTTGACAAAACAGGGACCCTCACGGTTGGTAGACCTGTTGTGACAAACATTGTCACTCCTAACTGCATAAAAAATGCAATTTCAAGCCAAACTGAAGAAAATGCTTTGTCTGATGTTGAAGTTCTAAGGTTAGCAGCTGCAGTAGAATCAAATTCAGTACATCCAGTTGGGAAAGCGATTGTGGACGCTGCTCAGGATGTTAATTGTCATAATGCTAAGGTAAAAGATGGAACATTCCTGGAAGAACCTGGATCTGGTGCTGTGGCAACAATCGATAACAAAAAGGTTTCTGTTGGGACATTGGAATGGATTACCAGGCATGGAGTTATTAACAGTATACATCAAGAAGTGGAGAAGAGTAATAACCAATCCTTTGTCTATGTTGGAGTTGATGATACTTTAGCTGGCCTAATTTATTTTGAAGATGAGATAAGGGAAGATGCAAGAGACGTTGTTGACAGATTGTCAAAGCAAAATATAGGTGTATACATGCTATCAGGAGACAAGAGGAATGCTGCTGAGCATGTTGCTTCCCTTGTTGGAATTCCCAAAGAGAAGGTGCTATCTGAAGTAAAACCAGATGAGAAAAAGAAGTTCATAAATGAACTACAGAAAGATAAGAACATTGTAGCAATGGTTGGTGATGGAATTAACGATGCAGCTGCCCTGGCTTCTTCACATGTTGGTATTGCATTAGGTGGAGGTGTCGGGGCTGCTAGTGAGGTGTCTTCTATTGTATTAATGCGCAACCAGCTCTCACAGCTAGTTGATGCCTTGGAACTTAGCAGGCTGACCATGAATACTGTAAAACAAAATCTTTGGTGGGCTTTCATATACAACATTGTAGGAATTCCAATTGCAGCTGGAGTGTTATTTCCCATAAATGGGACTGTGCTGACTCCATCAATTGCAGGGGCTCTCATGGGGCTGAGTTCCATTGGCGTAATGACTAACTCGTTACTTCTGAGATTCAAATTTTCCTCAAAGCAGAAACAAATACATGGCACATTGCCAAAGACCAAAATCCATGTGGATTCTGATCTGGCACAACAAAACCACAAAACATACCGACCTTATTAG 2733 0.4479 MPRRFLQQQQQLLPHSVFFRFRAVAVLAPPFPRTAPANTVPCALHFELRRLPLLPLPADGHGGAGTGDGGGGGGGSGGESGDANLKLVGDASQDLSALSPDVIILDVSGMVCGGCAATVKRILESRPQVSSASVNLTTETAIVWPISEAKNAPNWQKELGEALAEHLTSCGYNSSLRDSTRDNFLQIFERKMEERHRQLRESGRELAVSWALCAVCLVGHFSHFFAAKAPWIHVFHSIGFHLSLSLFTLLGPGRQLILDGLKSLLKRTPNMNTLVGLGALSSFTVSSFATLLPNLGWKAFFEEPIMLIAFVLLGRNLEQRAKIKATSDMTGLLSLLPPKARLLVNNGETEVGSVVEVPSDSLSVGDQIIVLPGDRIPADGVVRSGRSTIDESSFTGEPLPVTKVPGSEVAAGSINLNGTLTLEVQRPGGETAMADIVRLVEEAQSREAPVQRLADKVAGQFTYGVMTASAATFTFWSLYGTRILPPALYQGSAVSLALQLACSVLVVACPCALGLATPTAVLVGTSLGAKRGLLLRGGNILEKFAMVNTVVFDKTGTLTVGRPVVTNIVTPNCIKNAISSQTEENALSDVEVLRLAAAVESNSVHPVGKAIVDAAQDVNCHNAKVKDGTFLEEPGSGAVATIDNKKVSVGTLEWITRHGVINSIHQEVEKSNNQSFVYVGVDDTLAGLIYFEDEIREDARDVVDRLSKQNIGVYMLSGDKRNAAEHVASLVGIPKEKVLSEVKPDEKKKFINELQKDKNIVAMVGDGINDAAALASSHVGIALGGGVGAASEVSSIVLMRNQLSQLVDALELSRLTMNTVKQNLWWAFIYNIVGIPIAAGVLFPINGTVLTPSIAGALMGLSSIGVMTNSLLLRFKFSSKQKQIHGTLPKTKIHVDSDLAQQNHKTYRPY 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01611 910 ProSitePatterns Heavy-metal-associated domain. 107 136 IPR017969 GO:0046872
Pumo6g01611 910 CDD HMA 105 172 IPR006121 GO:0046872
Pumo6g01611 910 NCBIfam copper-translocating P-type ATPase 253 874 - -
Pumo6g01611 910 Gene3D - 542 814 IPR023214 -
Pumo6g01611 910 FunFam Copper-transporting ATPase PAA1 chloroplastic 680 831 - -
Pumo6g01611 910 Pfam E1-E2 ATPase 335 531 - -
Pumo6g01611 910 NCBIfam HAD-IC family P-type ATPase 594 843 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pumo6g01611 910 NCBIfam HAD-IC family P-type ATPase 309 572 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pumo6g01611 910 Gene3D - 562 695 IPR023299 GO:0000166
Pumo6g01611 910 FunFam Copper-transporting ATPase PAA1 chloroplastic 562 695 - -
Pumo6g01611 910 ProSitePatterns E1-E2 ATPases phosphorylation site. 553 559 IPR018303 -
Pumo6g01611 910 MobiDBLite consensus disorder prediction 57 84 - -
Pumo6g01611 910 Pfam haloacid dehalogenase-like hydrolase 547 776 - -
Pumo6g01611 910 Gene3D - 321 444 - -
Pumo6g01611 910 SFLD Haloacid Dehalogenase 534 814 - -
Pumo6g01611 910 FunFam Copper-transporting ATPase PAA1, chloroplastic 101 176 - -
Pumo6g01611 910 SUPERFAMILY Calcium ATPase, transduction domain A 352 440 IPR008250 -
Pumo6g01611 910 ProSiteProfiles Heavy-metal-associated domain profile. 101 175 IPR006121 GO:0046872
Pumo6g01611 910 NCBIfam heavy metal translocating P-type ATPase 271 873 IPR027256 GO:0006812|GO:0016020|GO:0019829
Pumo6g01611 910 PRINTS P-type cation-transporting ATPase superfamily signature 764 783 - -
Pumo6g01611 910 PRINTS P-type cation-transporting ATPase superfamily signature 551 565 - -
Pumo6g01611 910 PRINTS P-type cation-transporting ATPase superfamily signature 787 799 - -
Pumo6g01611 910 PRINTS P-type cation-transporting ATPase superfamily signature 687 698 - -
Pumo6g01611 910 PRINTS P-type cation-transporting ATPase superfamily signature 709 719 - -
Pumo6g01611 910 PRINTS P-type cation-transporting ATPase superfamily signature 390 404 - -
Pumo6g01611 910 Pfam Heavy-metal-associated domain 105 172 IPR006121 GO:0046872
Pumo6g01611 910 SUPERFAMILY Calcium ATPase, transmembrane domain M 301 846 IPR023298 -
Pumo6g01611 910 Gene3D - 102 179 - -
Pumo6g01611 910 FunFam Copper-transporting ATPase 1, putative 322 444 - -
Pumo6g01611 910 PANTHER ATP7, ISOFORM B 99 875 - -
Pumo6g01611 910 SUPERFAMILY HMA, heavy metal-associated domain 103 174 IPR036163 GO:0046872
Pumo6g01611 910 SUPERFAMILY HAD-like 549 870 IPR036412 -
Pumo6g01611 910 CDD P-type_ATPase_Cu-like 204 875 - -
Pumo6g01611 910 PRINTS Copper-transporting ATPase signature 534 549 - -
Pumo6g01611 910 PRINTS Copper-transporting ATPase signature 741 758 - -
Pumo6g01611 910 PRINTS Copper-transporting ATPase signature 256 275 - -
Pumo6g01611 910 PRINTS Copper-transporting ATPase signature 304 323 - -
Pumo6g01611 910 SFLD p-type atpase 534 814 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01611 Pumo-Chr6 23459719 23489551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01611 253 874 Primary Pumps ATPases AT1G63440 39.308 2.13e-125 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01611 K17686 - gmx:100796210 1543.48