Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01593 ATGGATGTTTTATCTTTAAGCTCAAGTTCAAGCCTAAGCATGTGCAAGCCCTTTCAATCTCATGGCCTTCCACTCTCAAGTAAACATCAAAGAGCTTCTTCTAGTGTGAAGTTTGGTGGTGTTTCATGCAGAGCTACAACGTTAACCCAAGAAAACTTGTACACAATATTGTCTGTGAGTCCGGGAAGTGCAACAATGGATGAGATCAAGAGGGCTTATAGGTCAATGGCTCTTCAGTACCACCCTGATGTTTGCCATGATCCTTACATGAAAGAGGAGTCAACGAGGATGTTTGTGCAGCTAAATGCAGCGTACAAGACCTTGTCCAATCCAAGGCTTCGAGAACAGTATGATAGTGAATTGGGTTTGAGAAACAAAGTGATGAGTGTTAGTTGTGATCATGAGAGATGGGGAAGTGTGAGTGTTAGTAGTGAACATGAGAGTGAGAGATGGGAAAGTAGGTTTCAGGAGCAAGTGATTGAGTTGAAGACAAGGTCTCGAAGACGCATGGGACAAAAAGGGGGATCATCGAGTAGCAGAATGAGGACACAAAACATGAGAGACAGGAATTGA 573 0.4328 MDVLSLSSSSSLSMCKPFQSHGLPLSSKHQRASSSVKFGGVSCRATTLTQENLYTILSVSPGSATMDEIKRAYRSMALQYHPDVCHDPYMKEESTRMFVQLNAAYKTLSNPRLREQYDSELGLRNKVMSVSCDHERWGSVSVSSEHESERWESRFQEQVIELKTRSRRRMGQKGGSSSSRMRTQNMRDRN 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01593 190 Gene3D DnaJ domain 41 138 IPR036869 -
Pumo6g01593 190 SMART dnaj_3 51 113 IPR001623 -
Pumo6g01593 190 FunFam Chaperone protein dnaJ 20, chloroplastic 39 142 - -
Pumo6g01593 190 MobiDBLite consensus disorder prediction 164 190 - -
Pumo6g01593 190 CDD DnaJ 52 110 IPR001623 -
Pumo6g01593 190 PRINTS DnaJ domain signature 55 73 IPR001623 -
Pumo6g01593 190 PRINTS DnaJ domain signature 93 113 IPR001623 -
Pumo6g01593 190 PRINTS DnaJ domain signature 73 88 IPR001623 -
Pumo6g01593 190 Pfam DnaJ domain 52 118 IPR001623 -
Pumo6g01593 190 ProSiteProfiles dnaJ domain profile. 52 121 IPR001623 -
Pumo6g01593 190 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 11 188 - -
Pumo6g01593 190 SUPERFAMILY Chaperone J-domain 44 117 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01593 Pumo-Chr6 23307916 23308739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01593 54 119 C2H2 Transcription Factor Family AT1G74250 41.176 4.24e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01593 - - gmx:100811478 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01593 6 23307916 23308739 Pumo2g01107 2 16175833 16176345 PCT