Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01590 ATGGGCAACATGGAGCGAGTGATTTCATCTTTCATGTGTTTGTTTCTTCTTTGGGCATTTTTGGTGCTCAAAGTTTCTGGCAATACAGAAGGTGATGCCCTGAGTGCATTGAAGAACAGTGTGACTGATCCTAACAATGTTCTTCAAAGTTGGGATTCTACCCTTGTCACTCCTTGCACATGGTTTCATGTTACTTGCAACAATGAAAATAGCGTGACCCGTGTTGATCTTGGAAATGCAAACCTTTCGGGTCAACTTGTTCCACAGCTTGGTCAACTCCCAAATTTGCAATACTTGGAACTTTATAGTAATAATATAACTGGGAAAATCCCGGATGAGCTTGGAAGTTTGACAAACTTGGTGAGCTTGGATCTTTACCTGAACAAGATTACTGGTCCCATTCCAGACAAATTGGCCAACCTTAAAAAACTACGTTTCCTGCGTCTCAACAATAACAGCTTGTCAGGAGGGATTCCTATGCGTTTGACCACTGTTAATTCACTGCAAGTGCTTGATTTATCGAACAACAACTTATCAGGAGATGTCCCAGTCAATGGTTCTTTTTCAATTTTTACTCCCATCAGTTTTAGGAATAATCCTTTATTGAGCAATAAAAGCATGCTAACTCCACCGGCTCCCACACCACCACCAAGTCCTTCAGGTAATAGTAACCGTGCTATTGGAGCTATTGCTGGAGGAGTTGCTGTGGGTGCTGCACTGTTGTTTGCAGCCCCAGTAATTGCACTTGTTTATTGGAAAAGAAGGAAGCCACAGGATTTTTTCTTTGATGTTGCAGCTGAGGAGGATCCTGAAGTTCACCTTGGTCAGCTTAAAAGGTTTTCACTGCGTGAACTGCAAGTTGCAACAGATACCTTTAATAACAAAAACATTCTTGGTAGAGGTGGATTTGGCAAGGTTTATAAAGGACGCTTAACAAATGGTGATCTTGTAGCAGTAAAAAGACTTAAAGAGGAACGCACCCAAGGTGGGGAGATGCAATTTCAAACTGAAGTGGAAATGATCAGCATGGCTGTTCATCGAAATTTGCTTCGCCTGCGTGGTTTCTGTATGACACCTACTGAACGCTTGCTTGTGTATCCTTTCATGGTTAATGGAAGTGTAGCTTCATGCTTACGAGATCGTCCGGAATCACAACCACCACTTGAATGGCCAAAACGGAAGACTATTGCTCTAGGAGCTGCTAGGGGGCTTGCTTATTTGCACGATCATTGCGACCCAAAGATTATTCACCGTGATGTCAAAGCTGCTAACATATTGTTAGATGAGGACTTTGAAGCAGTTGTTGGAGATTTTGGTTTAGCAAAGCTTATGGATTATAAGGATACTCATGTTACTACTGCAGTACGTGGTACAATTGGCCATATAGCACCAGAGTACCTCTCAACAGGAAAGTCTTCTGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTTGATTTAGCACGACTTGCCAATGATGATGATGTCATGTTGCTTGATTGGGTGAAAGCACTTCTAAAAGACAAGAGGTTGGAGACACTGGTGGATGCAGATTTAGATGGAAAATATGAGGAGGCAGAAGTAGAGGAGTTAATCCAAGTGGCCTTGTTATGCACACAAAGCTCCCCTATGGAGAGACCAAAGATGTCTGAGGTGGTGAGAATGCTAGAGGGTGAAGGTTTGGCAGAAAAATGGGATAAATGGTGGCAGAAAGAGGATATGATCCAACAAAACTTCGACCCCTCCAATCTCCACACTGCTTATAATTGGCCATTTAATGGTCACTCAACTTCAAATATTCCACCAGATGAACTGTCAGGTCCTAGATGA 1860 0.4242 MGNMERVISSFMCLFLLWAFLVLKVSGNTEGDALSALKNSVTDPNNVLQSWDSTLVTPCTWFHVTCNNENSVTRVDLGNANLSGQLVPQLGQLPNLQYLELYSNNITGKIPDELGSLTNLVSLDLYLNKITGPIPDKLANLKKLRFLRLNNNSLSGGIPMRLTTVNSLQVLDLSNNNLSGDVPVNGSFSIFTPISFRNNPLLSNKSMLTPPAPTPPPSPSGNSNRAIGAIAGGVAVGAALLFAAPVIALVYWKRRKPQDFFFDVAAEEDPEVHLGQLKRFSLRELQVATDTFNNKNILGRGGFGKVYKGRLTNGDLVAVKRLKEERTQGGEMQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRDRPESQPPLEWPKRKTIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKALLKDKRLETLVDADLDGKYEEAEVEELIQVALLCTQSSPMERPKMSEVVRMLEGEGLAEKWDKWWQKEDMIQQNFDPSNLHTAYNWPFNGHSTSNIPPDELSGPR 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01590 619 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 14 576 - -
Pumo6g01590 619 FunFam Somatic embryogenesis receptor kinase 1 261 368 - -
Pumo6g01590 619 Gene3D Ribonuclease Inhibitor 26 210 IPR032675 -
Pumo6g01590 619 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524
Pumo6g01590 619 ProSiteProfiles Protein kinase domain profile. 292 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01590 619 FunFam Somatic embryogenesis receptor-like kinase 1 369 587 - -
Pumo6g01590 619 SMART serkin_6 292 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01590 619 FunFam Somatic embryogenesis receptor kinase 1 26 214 - -
Pumo6g01590 619 Gene3D Transferase(Phosphotransferase) domain 1 369 587 - -
Pumo6g01590 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Pumo6g01590 619 Pfam Leucine rich repeat 94 154 IPR001611 GO:0005515
Pumo6g01590 619 SUPERFAMILY Protein kinase-like (PK-like) 272 567 IPR011009 -
Pumo6g01590 619 MobiDBLite consensus disorder prediction 205 224 - -
Pumo6g01590 619 SUPERFAMILY L domain-like 30 202 - -
Pumo6g01590 619 Gene3D Phosphorylase Kinase; domain 1 261 368 - -
Pumo6g01590 619 Pfam Protein kinase domain 293 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01590 619 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01590 Pumo-Chr6 23265726 23272538 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01590 4 619 Receptor kinase-like Gene Family AT4G33430 74.135 0.0 923
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Pumo6g01590 Pkinase 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01590 K13416 - gmx:100804180 1078.93