Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01589 ATGGCCAACATGGAGGGAGTGATTTCATCTTTCATGTGTTGGTTTCTTATTCTTTGGATATTTTTGGTGCTTGACTTAGTGCTCAAGGTTTCTGGCAACGCAGAAGGTGATGCCCTGACTGCATTGAAGAACAATATGATTGATCCTAATAATGCTCTTCATAGTTGGGATTCTACCCTTGTCAATCCTTGCATATGGTTTCATGTTTCTTGCAACAATGAAAATAGCGTGATTCGTGTTGATCTTGGAAATGCAAACCTTTCGGGTCAACTTGTTCCACAGCTTGGTCAGCTCCCAAATTTGGAATACTTGGAACTTTATAGTAATAATATAACTGGGGAAATCCCAGATGAGCTTGGAAGTTTGACAAACTTGGAGAGCTTGGATCTTTACATGAACAACATTACTGGTCCCATTCCAGACAGATTGGCCAATCTTAAAAAACTACGTTTCCTGCGTCTCAACAATAACAGCTTGTCAGGAAACATTCCTGTGGGTTTGACCACTATTAATTCACTGCAAGTGCTGGATTTATCGAACAACAACTTAACAGGAACTGTCCCAGTTAATGGTTCATTTTCAATTTTTACTCCCATCAGTTTTAACAATAATCGTTTCTTGAATCAAACCACTCCAGTTACGCCAGCTGCTACACCGCAACAAAATCCTTCAGGTAATGGTATCAGAGCTATTGGAGCCATTGCTGGAGGAGTTGCTGTGGGTGCTGCACTGTTGTTTGCAGCCCCAGTAATTGCACTTGTTTATTGGAATAGAAGGACGCCACAGCCACCGGATTATTACTTTGATGTCGCAGCTGAGGAGGATCCTGAAGTTAGCCTTGGTCAGCTTAAAAAGTTTTCACTGCATGAACTGAAAATTGCAACAGATAACTTTAATATCAAAAACATTCTTGGTAAAGGTGGATTTGGCAAGGTTTATAAAGGACGTTTAACAAATGGTGATGATGTAGCAGTAAAAAGACTTAACCAGGAACGCATCCGGGGTGAGGATAAGCAATTTCAAATAGAAGTGGAAATGATCAGCATGGCTGTGCATCGAAATTTGCTTCGCCTGATTGGTTTTTGTATGACACCTTCTGAACGCTTGCTTGTGTATCCTCTAATGGCTAATGGAAGTGTAGAATCACGTTTACGAGAGCGTTCGGAATCACAACCACCACTTGAATGGCCGATGCGGAAGCGTATTGCTCTGGGAGCTGCTAGGGGGCTTGCTTATTTGCATGATCATTGTGACCCAAAGATTATTCATCGTGATGTGAAAGCTGCTAATATACTGTTGGATGAGGACTTCGAAGCAGTTGTCGGAGATTTTGGTTTAGCAAGGATTATGGATTACAAAAATACTCATGTTACTACTGCTGTATGTGGTACGCATGGCCATATAGCACCAGAGTATCTCACAACTGGAAGGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTTGATTTAGCACGATTCGCCAGGGATGAGGATGTCATGTTGCTTGAATGGGTGAAAACACTAGTGAAAGACAAGAAGTTGAAGACACTGGTGGATGCAGATTTAGAGGGAAATTACGATGAGGAGGAAGTAGAGGAGGTAATCCAAGTGGCCTTGCTATGCACACAAAGCTCCCCTTCGGAAAGACCAAAGATGTCTGAGGTGGTAAGAATGCTAGAAGGTGAAGGTTTGGCAGAAAAGTGGGATCAATGGTGGAATAAGAAAGAGGATATGATCCAACAAAATTTCAACCCCTTTAATCTCTACACTCCTTATGACTCATCAACTTCAAATATTCAACCAGATGAACTCTCAGGTCCTAGATGA 1866 0.4164 MANMEGVISSFMCWFLILWIFLVLDLVLKVSGNAEGDALTALKNNMIDPNNALHSWDSTLVNPCIWFHVSCNNENSVIRVDLGNANLSGQLVPQLGQLPNLEYLELYSNNITGEIPDELGSLTNLESLDLYMNNITGPIPDRLANLKKLRFLRLNNNSLSGNIPVGLTTINSLQVLDLSNNNLTGTVPVNGSFSIFTPISFNNNRFLNQTTPVTPAATPQQNPSGNGIRAIGAIAGGVAVGAALLFAAPVIALVYWNRRTPQPPDYYFDVAAEEDPEVSLGQLKKFSLHELKIATDNFNIKNILGKGGFGKVYKGRLTNGDDVAVKRLNQERIRGEDKQFQIEVEMISMAVHRNLLRLIGFCMTPSERLLVYPLMANGSVESRLRERSESQPPLEWPMRKRIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEDFEAVVGDFGLARIMDYKNTHVTTAVCGTHGHIAPEYLTTGRSSEKTDVFGYGVMLLELITGQRAFDLARFARDEDVMLLEWVKTLVKDKKLKTLVDADLEGNYDEEEVEEVIQVALLCTQSSPSERPKMSEVVRMLEGEGLAEKWDQWWNKKEDMIQQNFNPFNLYTPYDSSTSNIQPDELSGPR 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01589 621 Gene3D Transferase(Phosphotransferase) domain 1 375 593 - -
Pumo6g01589 621 Gene3D Phosphorylase Kinase; domain 1 267 373 - -
Pumo6g01589 621 FunFam Somatic embryogenesis receptor-like kinase 1 375 593 - -
Pumo6g01589 621 ProSiteProfiles Protein kinase domain profile. 298 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01589 621 Gene3D Ribonuclease Inhibitor 32 214 IPR032675 -
Pumo6g01589 621 FunFam Somatic embryogenesis receptor kinase 1 31 220 - -
Pumo6g01589 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Pumo6g01589 621 SUPERFAMILY Protein kinase-like (PK-like) 278 573 IPR011009 -
Pumo6g01589 621 SMART serkin_6 298 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01589 621 SUPERFAMILY L domain-like 35 207 - -
Pumo6g01589 621 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 16 582 - -
Pumo6g01589 621 Pfam Leucine Rich Repeat 172 186 IPR001611 GO:0005515
Pumo6g01589 621 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Pumo6g01589 621 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
Pumo6g01589 621 FunFam Somatic embryogenesis receptor kinase 1 267 374 - -
Pumo6g01589 621 Pfam Leucine rich repeat 99 159 IPR001611 GO:0005515
Pumo6g01589 621 Pfam Protein kinase domain 299 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01589 Pumo-Chr6 23228696 23262106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01589 13 621 Receptor kinase-like Gene Family AT4G33430 66.918 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Pumo6g01589 Pkinase 3.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01589 K13416 - gmx:100804708 978.008