Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01582 ATGGGAGATAACAATGTCAACCTCCCACCCGGGTTTCACTTTTATCCCACAGATGAAGAGCTTGTTGTTCATTTCCTTCAAAGAAAGGCAAATCTTCTACCTTGCCATCCAGATGTCATCCCTGATCTTGAACTCTACCCTTATGATCCTTGGGAACTTCATGGTAGAGCTTTGGCAGAGGGAAATCAATGGTACTACTACAGCAGAAGGGCACAAAATAGGGTCACTGGCAATGGTTATTGGATGCCAATGGGAATGGAAGAGCCAGTGGTTTCAAGCTCAAGCAACAAGAGAGTTGGCATGAAGAAATATTATGTGTTCCATGTTGGAGAAGCCCCTGATGGCAACACAACCAATTGGATAATGCAAGAGTATCGTCTATTAGATTCTGCTTCCTCTAGCAGATCATCATCCAGAAGAAGATCACAACCAAAACCGGACCATAGTAAATGGGTGATTTGTCGAGTTTATGAACGGGATAACGATGATGATGATGGTGATGGAACAGAGCTCTCTTGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGACGAAATAAGTTTGCCAAATTAG 576 0.4253 MGDNNVNLPPGFHFYPTDEELVVHFLQRKANLLPCHPDVIPDLELYPYDPWELHGRALAEGNQWYYYSRRAQNRVTGNGYWMPMGMEEPVVSSSSNKRVGMKKYYVFHVGEAPDGNTTNWIMQEYRLLDSASSSRSSSRRRSQPKPDHSKWVICRVYERDNDDDDGDGTELSCLDEVFLSLDDLDEISLPN 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01582 191 Gene3D NAC domain 17 164 IPR036093 GO:0003677|GO:0006355
Pumo6g01582 191 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
Pumo6g01582 191 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
Pumo6g01582 191 ProSiteProfiles NAC domain profile. 8 159 IPR003441 GO:0003677|GO:0006355
Pumo6g01582 191 PANTHER NAC TRANSCRIPTION FACTOR 56 8 163 - -
Pumo6g01582 191 FunFam NAC domain-containing protein 104 17 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01582 Pumo-Chr6 23014016 23015018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01582 6 161 NAC Transcription Factor Family AT1G52890 42.683 4.42e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo6g01582 NAM 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01582 - - gmx:100788893 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01582 6 23014016 23015018 Pumo6g01582 6 23014016 23015018 ECH
Pumo6g01582 6 23014016 23015018 Pumo2g01119 2 16358294 16360091 PCT